Il1bos Gene Detail

Summary

• Symbol
  Il1bos
• Name
  interleukin 1 beta, opposite strand
• Synonyms
  Gm14047

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3650458
  NCBI Gene: 329514
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:129211822-129217653 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 62.98 cM

Strain
Comparison

• SNPs within 2kb
  268 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650458	antisense lncRNA gene	Chr2:129211817-129217668 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003636	antisense lncRNA gene	Chr2:132761685-132767532 (+)
A/J	MGP_AJ_G0003618	antisense lncRNA gene	Chr2:127378811-127384662 (+)
AKR/J	MGP_AKRJ_G0003596	antisense lncRNA gene	Chr2:130992445-130998292 (+)
BALB/cJ	MGP_BALBcJ_G0003607	antisense lncRNA gene	Chr2:127636191-127642261 (+)
C3H/HeJ	MGP_C3HHeJ_G0003554	antisense lncRNA gene	Chr2:131507261-131513111 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003746	antisense lncRNA gene	Chr2:136909931-136915776 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003254	antisense lncRNA gene	Chr2:122192378-122198045 (+)
CAST/EiJ	MGP_CASTEiJ_G0003517	antisense lncRNA gene	Chr2:131763680-131769448 (+)
CBA/J	MGP_CBAJ_G0003551	antisense lncRNA gene	Chr2:141971522-141977372 (+)
DBA/2J	MGP_DBA2J_G0003559	antisense lncRNA gene	Chr2:126768412-126774263 (+)
FVB/NJ	MGP_FVBNJ_G0003579	antisense lncRNA gene	Chr2:125414408-125420255 (+)
LP/J	MGP_LPJ_G0003636	antisense lncRNA gene	Chr2:132997151-133002998 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003567	antisense lncRNA gene	Chr2:145867096-145872948 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003747	antisense lncRNA gene	Chr2:131037392-131043239 (+)
PWK/PhJ	MGP_PWKPhJ_G0003472	antisense lncRNA gene	Chr2:126349797-126355731 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003415	antisense lncRNA gene	Chr2:130159089-130164810 (+)
WSB/EiJ	MGP_WSBEiJ_G0003551	antisense lncRNA gene	Chr2:131960841-131968003 (+)

Homology

• Gene Tree
  Il1bos
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Il1bos
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000074805 (Evidence)
• NCBI Gene
  329514

Representative Sequences			Length	Strain/Species
genomic	329514	NCBI Gene Model | MGI Sequence Detail	5832	C57BL/6J
transcript	NR_015474	RefSeq | MGI Sequence Detail	1396	C57BL/6
polypeptide	Q8C678	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Il1bos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr20123	Chr2:129213400-129213411 (+)	1,584 bp
Tssr20124	Chr2:129213855-129213866 (+)	2,039 bp