Gm13579 Pseudogene Detail

Summary

• Symbol
  Gm13579
• Name
  predicted gene 13579

• Feature Type
  pseudogene
• IDs
  MGI:3650459
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:60860695-60861314 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 35.23 cM

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650459	pseudogene	Chr2:60860695-60861314 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011666	pseudogene	Chr2:60648248-60648867 (-)
A/J	MGP_AJ_G0011663	pseudogene	Chr2:58322928-58323547 (-)
AKR/J	MGP_AKRJ_G0011628	pseudogene	Chr2:59923133-59923752 (-)
BALB/cJ	MGP_BALBcJ_G0011644	pseudogene	Chr2:58439785-58440404 (-)
C3H/HeJ	MGP_C3HHeJ_G0011530	pseudogene	Chr2:60020930-60021549 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011938	pseudogene	Chr2:62435669-62436288 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011322	pseudogene	Chr2:60068227-60068846 (-)
CBA/J	MGP_CBAJ_G0011501	pseudogene	Chr2:64805852-64806471 (-)
DBA/2J	MGP_DBA2J_G0011557	pseudogene	Chr2:57908319-57908938 (-)
FVB/NJ	MGP_FVBNJ_G0011560	pseudogene	Chr2:57451959-57452578 (-)
LP/J	MGP_LPJ_G0011625	pseudogene	Chr2:60495189-60495808 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011558	pseudogene	Chr2:66394891-66395510 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011930	pseudogene	Chr2:59951508-59952127 (-)
PWK/PhJ	MGP_PWKPhJ_G0011180	pseudogene	Chr2:57774533-57775152 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010999	pseudogene	Chr2:60049879-60050501 (-)
WSB/EiJ	MGP_WSBEiJ_G0011346	pseudogene	Chr2:60261432-60262052 (-)

Homology

• Gene Tree
  Gm13579
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13579
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000083334 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083334	Ensembl Gene Model | MGI Sequence Detail	620	C57BL/6J
transcript	ENSMUST00000118519	Ensembl | MGI Sequence Detail	517	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;