Gm11629 Gene Detail

Summary

• Symbol
  Gm11629
• Name
  predicted gene 11629

• Feature Type
  lncRNA gene
• IDs
  MGI:3650474
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:97913781-97917571 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 61.55 cM

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650474	lncRNA gene	Chr11:97913781-97917571 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015204	unclassified non-coding RNA gene	Chr11:100514615-100520249 (+)
A/J	MGP_AJ_G0015178	unclassified non-coding RNA gene	Chr11:96355646-96359436 (+)
AKR/J	MGP_AKRJ_G0015141	unclassified non-coding RNA gene	Chr11:99344151-99348103 (+)
BALB/cJ	MGP_BALBcJ_G0015140	unclassified non-coding RNA gene	Chr11:96854487-96858331 (+)
C3H/HeJ	MGP_C3HHeJ_G0014964	unclassified non-coding RNA gene	Chr11:99472266-99478552 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015597	unclassified non-coding RNA gene	Chr11:103608383-103612173 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013340	unclassified non-coding RNA gene	Chr11:93808432-93812714 (+)
CAST/EiJ	MGP_CASTEiJ_G0014517	unclassified non-coding RNA gene	Chr11:100338776-100344484 (+)
CBA/J	MGP_CBAJ_G0014943	unclassified non-coding RNA gene	Chr11:107898360-107902150 (+)
DBA/2J	MGP_DBA2J_G0015036	unclassified non-coding RNA gene	Chr11:95906025-95909829 (+)
FVB/NJ	MGP_FVBNJ_G0015048	unclassified non-coding RNA gene	Chr11:95408654-95412461 (+)
LP/J	MGP_LPJ_G0015117	unclassified non-coding RNA gene	Chr11:101005808-101009618 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015074	unclassified non-coding RNA gene	Chr11:107718670-107722460 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015636	unclassified non-coding RNA gene	Chr11:99664384-99668177 (+)
PWK/PhJ	MGP_PWKPhJ_G0014309	unclassified non-coding RNA gene	Chr11:96896753-96900764 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014096	unclassified non-coding RNA gene	Chr11:99379634-99383293 (+)
WSB/EiJ	MGP_WSBEiJ_G0014620	unclassified non-coding RNA gene	Chr11:99571110-99574796 (+)

Homology

• Gene Tree
  Gm11629
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  6
• Targeted
  1
• Genomic Mutations
  1 involving Gm11629
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086716 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086716	Ensembl Gene Model | MGI Sequence Detail	3791	C57BL/6J
transcript	ENSMUST00000123784	Ensembl | MGI Sequence Detail	384	Not Applicable

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11629:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104695	Chr11:97913527-97913556 (+)	-239 bp
Tssr104696	Chr11:97913618-97913628 (+)	-158 bp
Tssr104697	Chr11:97913897-97913911 (+)	123 bp