Gm12996 Gene Detail

Summary

• Symbol
  Gm12996
• Name
  predicted gene 12996

• Feature Type
  lncRNA gene
• IDs
  MGI:3650481
  NCBI Gene: 100502973
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:116682100-116687800 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.35 cM

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650481	lncRNA gene	Chr4:116681037-116687802 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003939	antisense lncRNA gene	Chr4:117758856-117767371 (+)
A/J	MGP_AJ_G0003920	antisense lncRNA gene	Chr4:113225673-113231560 (+)
AKR/J	MGP_AKRJ_G0003897	antisense lncRNA gene	Chr4:115688878-115694566 (+)
BALB/cJ	MGP_BALBcJ_G0003906	antisense lncRNA gene	Chr4:113858750-113864452 (+)
C3H/HeJ	MGP_C3HHeJ_G0003853	antisense lncRNA gene	Chr4:117255553-117263804 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004054	antisense lncRNA gene	Chr4:122298616-122304316 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003542	antisense lncRNA gene	Chr4:107272198-107277797 (+)
CAST/EiJ	MGP_CASTEiJ_G0003816	antisense lncRNA gene	Chr4:114483790-114489600 (+)
CBA/J	MGP_CBAJ_G0003846	antisense lncRNA gene	Chr4:125631869-125637509 (+)
DBA/2J	MGP_DBA2J_G0003862	antisense lncRNA gene	Chr4:113865982-113871695 (+)
FVB/NJ	MGP_FVBNJ_G0003881	antisense lncRNA gene	Chr4:112360991-112366917 (+)
LP/J	MGP_LPJ_G0003942	antisense lncRNA gene	Chr4:117945819-117952518 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003869	antisense lncRNA gene	Chr4:130607791-130614596 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004049	antisense lncRNA gene	Chr4:116834350-116840280 (+)
PWK/PhJ	MGP_PWKPhJ_G0003770	antisense lncRNA gene	Chr4:110643220-110649425 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003716	antisense lncRNA gene	Chr4:113112705-113120560 (+)
WSB/EiJ	MGP_WSBEiJ_G0003852	antisense lncRNA gene	Chr4:116708611-116714917 (+)

Homology

• Gene Tree
  Gm12996
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  13
• Chemically induced (other)
  2
• Gene trapped
  9
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12996
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2

• Ensembl
  ENSMUSG00000086417 (Evidence)
• NCBI Gene
  100502973

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086417	Ensembl Gene Model | MGI Sequence Detail	5701	C57BL/6J
transcript	ENSMUST00000151670	Ensembl | MGI Sequence Detail	636	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 17

  Phenotypes 9
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12