Gm11780 Pseudogene Detail

Summary

• Symbol
  Gm11780
• Name
  predicted gene 11780

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650485
  NCBI Gene: 622019
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:4528204-4528719 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 2.54 cM

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650485	pseudogene	Chr4:4527771-4529457 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012490	pseudogene	Chr4:1030748-1031263 (-)
A/J	MGP_AJ_G0012484	pseudogene	Chr4:1111738-1112253 (-)
AKR/J	MGP_AKRJ_G0012448	pseudogene	Chr4:1029822-1030337 (-)
BALB/cJ	MGP_BALBcJ_G0012467	pseudogene	Chr4:1029880-1030395 (-)
C3H/HeJ	MGP_C3HHeJ_G0012329	pseudogene	Chr4:1206062-1206577 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012780	pseudogene	Chr4:1198499-1199014 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011137	pseudogene	Chr4:967364-967879 (-)
CAST/EiJ	MGP_CASTEiJ_G0012097	pseudogene	Chr4:1102187-1102702 (-)
CBA/J	MGP_CBAJ_G0012309	pseudogene	Chr4:1110099-1110614 (-)
DBA/2J	MGP_DBA2J_G0012363	pseudogene	Chr4:1069368-1069883 (-)
FVB/NJ	MGP_FVBNJ_G0012364	pseudogene	Chr4:972082-972597 (-)
LP/J	MGP_LPJ_G0012437	pseudogene	Chr4:1069655-1070170 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012372	pseudogene	Chr4:1292722-1293237 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012784	pseudogene	Chr4:1030101-1030616 (-)
PWK/PhJ	MGP_PWKPhJ_G0011932	pseudogene	Chr4:1142335-1142850 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011752	pseudogene	Chr4:1051214-1051729 (-)
WSB/EiJ	MGP_WSBEiJ_G0012122	pseudogene	Chr4:1168600-1169115 (-)

Homology

• Gene Tree
  Gm11780
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000085155 (Evidence)
• NCBI Gene
  622019

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085155	Ensembl Gene Model | MGI Sequence Detail	516	C57BL/6J
transcript	ENSMUST00000136880	Ensembl | MGI Sequence Detail	516	Not Applicable
polypeptide	NP_001264848	RefSeq | MGI Sequence Detail	171	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm11780:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40839	Chr4:4529437-4529464 (-)	-732 bp