Gm13616 Pseudogene Detail

Summary

• Symbol
  Gm13616
• Name
  predicted gene 13616

• Feature Type
  pseudogene
• IDs
  MGI:3650491
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:65975998-65976219 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 39.05 cM

Strain
Comparison

• SNPs within 2kb
  96 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650491	pseudogene	Chr2:65975998-65976219 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011677	pseudogene	Chr2:65986374-65986595 (-)
A/J	MGP_AJ_G0011672	pseudogene	Chr2:63421321-63421542 (-)
AKR/J	MGP_AKRJ_G0011638	pseudogene	Chr2:65144272-65144493 (-)
BALB/cJ	MGP_BALBcJ_G0011653	pseudogene	Chr2:63593989-63594210 (-)
C3H/HeJ	MGP_C3HHeJ_G0011539	pseudogene	Chr2:65331571-65331792 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011947	pseudogene	Chr2:67922646-67922867 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010605	pseudogene	Chr2:115149754-115149971 (-)
CAST/EiJ	MGP_CASTEiJ_G0011329	pseudogene	Chr2:65376282-65376503 (-)
CBA/J	MGP_CBAJ_G0011512	pseudogene	Chr2:70456579-70456800 (-)
DBA/2J	MGP_DBA2J_G0011567	pseudogene	Chr2:63054582-63054803 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011633	pseudogene	Chr2:65812208-65812429 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011567	pseudogene	Chr2:72443126-72443347 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011939	pseudogene	Chr2:65211557-65211778 (-)
PWK/PhJ	MGP_PWKPhJ_G0011188	pseudogene	Chr2:62881448-62881669 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011007	pseudogene	Chr2:65444157-65444378 (+)
WSB/EiJ	MGP_WSBEiJ_G0011355	pseudogene	Chr2:65579539-65579760 (-)

Homology

• Gene Tree
  Gm13616
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13616
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000080728 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080728	Ensembl Gene Model | MGI Sequence Detail	222	C57BL/6J
transcript	ENSMUST00000120600	Ensembl | MGI Sequence Detail	222	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;