Gm12944 Pseudogene Detail

Summary

• Symbol
  Gm12944
• Name
  predicted gene 12944

• Feature Type
  pseudogene
• IDs
  MGI:3650498
  NCBI Gene: 102635997
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:126950055-126950517 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 61.23 cM

Strain
Comparison

• SNPs within 2kb
  76 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650498	pseudogene	Chr4:126949703-126950517 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012882	pseudogene	Chr4:128784582-128785007 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0012837	pseudogene	Chr4:127106432-127106887 (+)
BALB/cJ	MGP_BALBcJ_G0012846	pseudogene	Chr4:124275006-124275414 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013186	pseudogene	Chr4:133672008-133672496 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0012746	pseudogene	Chr4:122811548-122812350 (+)
LP/J	MGP_LPJ_G0012817	pseudogene	Chr4:129056564-129058321 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012758	pseudogene	Chr4:141926165-141931817 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013200	pseudogene	Chr4:127470482-127472141 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12944
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12944
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000084149 (Evidence)
• NCBI Gene
  102635997

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084149	Ensembl Gene Model | MGI Sequence Detail	463	C57BL/6J
transcript	ENSMUST00000119262	Ensembl | MGI Sequence Detail	463	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;