Gm11520 Gene Detail

Summary

• Symbol
  Gm11520
• Name
  predicted gene 11520

• Feature Type
  lncRNA gene
• IDs
  MGI:3650534
  NCBI Gene: 102640811
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:95201242-95215419 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  441 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650534	lncRNA gene	Chr11:95201157-95215420 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003038	antisense lncRNA gene	Chr11:97501866-97515706 (+)
A/J	MGP_AJ_G0003015	antisense lncRNA gene	Chr11:93572459-93587309 (+)
AKR/J	MGP_AKRJ_G0002996	antisense lncRNA gene	Chr11:96471619-96484784 (+)
BALB/cJ	MGP_BALBcJ_G0003002	antisense lncRNA gene	Chr11:94043371-94058139 (+)
C3H/HeJ	MGP_C3HHeJ_G0002958	antisense lncRNA gene	Chr11:96589456-96602288 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003144	antisense lncRNA gene	Chr11:100569553-100582388 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002683	antisense lncRNA gene	Chr11:91057473-91071801 (+)
CAST/EiJ	MGP_CASTEiJ_G0002928	antisense lncRNA gene	Chr11:97389908-97405444 (+)
CBA/J	MGP_CBAJ_G0002955	antisense lncRNA gene	Chr11:104674920-104689491 (+)
DBA/2J	MGP_DBA2J_G0002961	antisense lncRNA gene	Chr11:93144845-93158453 (+)
FVB/NJ	MGP_FVBNJ_G0002980	antisense lncRNA gene	Chr11:92614240-92626440 (+)
LP/J	MGP_LPJ_G0003037	antisense lncRNA gene	Chr11:98072446-98088110 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002968	antisense lncRNA gene	Chr11:104714863-104731070 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003148	antisense lncRNA gene	Chr11:96730127-96744844 (+)
PWK/PhJ	MGP_PWKPhJ_G0002887	antisense lncRNA gene	Chr11:94069098-94083070 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002832	antisense lncRNA gene	Chr11:96412523-96423194 (+)
WSB/EiJ	MGP_WSBEiJ_G0002958	antisense lncRNA gene	Chr11:96649587-96665683 (+)

Homology

• Gene Tree
  Gm11520
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  12 phenotype references
  

• All Mutations and Alleles
  231
• Gene trapped
  229
• Targeted
  2
• Genomic Mutations
  2 involving Gm11520
• Find Mice (IMSR)
  286 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000085143 (Evidence)
• NCBI Gene
  102640811

Representative Sequences			Length	Strain/Species
genomic	102640811	NCBI Gene Model | MGI Sequence Detail	14178	C57BL/6J
transcript	NR_155298	RefSeq | MGI Sequence Detail	740	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2144167

References

• Summaries
  All 23

  Phenotypes 12
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Gm11520:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104352	Chr11:95200696-95200737 (+)	-525 bp
Tssr104353	Chr11:95201130-95201164 (+)	-95 bp