Gm12080 Pseudogene Detail

Summary

• Symbol
  Gm12080
• Name
  predicted gene 12080

• Feature Type
  pseudogene
• IDs
  MGI:3650552
  NCBI Gene: 100534327
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:27997876-27998959 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 16.17 cM

Strain
Comparison

• SNPs within 2kb
  197 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650552	pseudogene	Chr11:27996035-27999117 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010642	pseudogene	Chr11:26005220-26008302 (+)
A/J	MGP_AJ_G0010636	pseudogene	Chr11:24965160-24968240 (+)
AKR/J	MGP_AKRJ_G0010597	pseudogene	Chr11:25799660-25802742 (+)
BALB/cJ	MGP_BALBcJ_G0010611	pseudogene	Chr11:25192641-25195723 (+)
C3H/HeJ	MGP_C3HHeJ_G0010529	pseudogene	Chr11:25706673-25709753 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010886	pseudogene	Chr11:26954750-26957832 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009533	pseudogene	Chr11:23694885-23703705 (+)
CAST/EiJ	MGP_CASTEiJ_G0010355	pseudogene	Chr11:25735253-25738333 (+)
CBA/J	MGP_CBAJ_G0010501	pseudogene	Chr11:28046734-28049816 (+)
DBA/2J	MGP_DBA2J_G0010536	pseudogene	Chr11:24805277-24808357 (+)
FVB/NJ	MGP_FVBNJ_G0010550	pseudogene	Chr11:24638108-24641190 (+)
LP/J	MGP_LPJ_G0010623	pseudogene	Chr11:26166527-26169609 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010525	pseudogene	Chr11:28979731-28982813 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010860	pseudogene	Chr11:25888628-25891708 (+)
PWK/PhJ	MGP_PWKPhJ_G0010249	pseudogene	Chr11:24912727-24915807 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010061	pseudogene	Chr11:25591839-25594908 (+)
WSB/EiJ	MGP_WSBEiJ_G0010410	pseudogene	Chr11:25580162-25583244 (+)

Homology

• Gene Tree
  Gm12080
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12080
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083201 (Evidence)
• NCBI Gene
  100534327

Representative Sequences			Length	Strain/Species
genomic	100534327	NCBI Gene Model | MGI Sequence Detail	1084	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6