Gm12419 Pseudogene Detail

Summary

• Symbol
  Gm12419
• Name
  predicted gene 12419

• Feature Type
  pseudogene
• IDs
  MGI:3650581
  NCBI Gene: 100417804
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:84841791-84842426 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 40.20 cM

Strain
Comparison

• SNPs within 2kb
  182 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650581	pseudogene	Chr4:84841678-84842444 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012728	pseudogene	Chr4:81643656-81644758 (-)
AKR/J	MGP_AKRJ_G0012700	pseudogene	Chr4:83743029-83746775 (-)
BALB/cJ	MGP_BALBcJ_G0012710	pseudogene	Chr4:81862469-81862991 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011330	pseudogene	Chr4:77576718-77577354 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012607	pseudogene	Chr4:81423874-81424501 (-)
FVB/NJ	MGP_FVBNJ_G0012611	pseudogene	Chr4:80420584-80421219 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012620	pseudogene	Chr4:95669491-95670105 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013047	pseudogene	Chr4:83809590-83811592 (-)
PWK/PhJ	MGP_PWKPhJ_G0012146	pseudogene	Chr4:79771970-79772608 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012349	pseudogene	Chr4:83982800-83983435 (-)

Homology

• Gene Tree
  Gm12419
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12419
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15
• RefSeq
  1

• Ensembl
  ENSMUSG00000080303 (Evidence)
• NCBI Gene
  100417804

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080303	Ensembl Gene Model | MGI Sequence Detail	636	C57BL/6J
transcript	ENSMUST00000116649	Ensembl | MGI Sequence Detail	636	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;