Gm12415 Gene Detail

Summary

• Symbol
  Gm12415
• Name
  predicted gene 12415

• Feature Type
  lncRNA gene
• IDs
  MGI:3650585
  NCBI Gene: 105247161
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:84659712-84660528 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.99 cM

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650585	lncRNA gene	Chr4:84659712-84662854 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006457	lincRNA gene	Chr4:84383407-84384223 (+)
A/J	MGP_AJ_G0006449	lincRNA gene	Chr4:81455500-81456316 (+)
AKR/J	MGP_AKRJ_G0006423	lincRNA gene	Chr4:83562202-83563018 (+)
BALB/cJ	MGP_BALBcJ_G0006423	lincRNA gene	Chr4:81683997-81684813 (+)
C3H/HeJ	MGP_C3HHeJ_G0006373	lincRNA gene	Chr4:84175076-84175892 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006589	lincRNA gene	Chr4:87681855-87682671 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005874	lincRNA gene	Chr4:77404656-77405463 (+)
CAST/EiJ	MGP_CASTEiJ_G0006306	lincRNA gene	Chr4:82084218-82085028 (+)
CBA/J	MGP_CBAJ_G0006356	lincRNA gene	Chr4:90352521-90353337 (+)
DBA/2J	MGP_DBA2J_G0006378	lincRNA gene	Chr4:81242947-81243763 (+)
FVB/NJ	MGP_FVBNJ_G0006400	lincRNA gene	Chr4:80236587-80237403 (+)
LP/J	MGP_LPJ_G0006459	lincRNA gene	Chr4:84744162-84744978 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006387	lincRNA gene	Chr4:95465926-95466742 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006593	lincRNA gene	Chr4:83619855-83620671 (+)
PWK/PhJ	MGP_PWKPhJ_G0006243	lincRNA gene	Chr4:79595194-79596009 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006155	lincRNA gene	Chr4:81188626-81189442 (+)
WSB/EiJ	MGP_WSBEiJ_G0006352	lincRNA gene	Chr4:83796245-83797061 (+)

Homology

• Gene Tree
  Gm12415
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12415
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000086413 (Evidence)
• NCBI Gene
  105247161

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086413	Ensembl Gene Model | MGI Sequence Detail	817	C57BL/6J
transcript	ENSMUST00000141637	Ensembl | MGI Sequence Detail	512	Not Applicable

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;