Gm12423 Pseudogene Detail

Summary

• Symbol
  Gm12423
• Name
  predicted gene 12423

• Feature Type
  pseudogene
• IDs
  MGI:3650594
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:47171669-47171803 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.00 cM

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650594	pseudogene	Chr4:47171669-47171803 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012639	pseudogene	Chr4:45537360-45537494 (+)
A/J	MGP_AJ_G0012628	pseudogene	Chr4:43827495-43827629 (+)
AKR/J	MGP_AKRJ_G0012597	pseudogene	Chr4:44935226-44935360 (+)
BALB/cJ	MGP_BALBcJ_G0012613	pseudogene	Chr4:43948356-43948490 (+)
C3H/HeJ	MGP_C3HHeJ_G0012474	pseudogene	Chr4:45521529-45521663 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012933	pseudogene	Chr4:47209312-47209446 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011249	pseudogene	Chr4:41207237-41207371 (+)
CAST/EiJ	MGP_CASTEiJ_G0012229	pseudogene	Chr4:45110295-45110429 (+)
CBA/J	MGP_CBAJ_G0012454	pseudogene	Chr4:48703364-48703498 (+)
DBA/2J	MGP_DBA2J_G0012510	pseudogene	Chr4:43730938-43731072 (+)
FVB/NJ	MGP_FVBNJ_G0012511	pseudogene	Chr4:42997425-42997559 (+)
LP/J	MGP_LPJ_G0012580	pseudogene	Chr4:45590244-45590378 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012517	pseudogene	Chr4:51745154-51745288 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012934	pseudogene	Chr4:45151725-45151859 (+)
PWK/PhJ	MGP_PWKPhJ_G0012059	pseudogene	Chr4:43840518-43840652 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011873	pseudogene	Chr4:44664561-44664695 (+)
WSB/EiJ	MGP_WSBEiJ_G0012251	pseudogene	Chr4:45077399-45077533 (+)

Homology

• Gene Tree
  Gm12423
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083491 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083491	Ensembl Gene Model | MGI Sequence Detail	135	C57BL/6J
transcript	ENSMUST00000118334	Ensembl | MGI Sequence Detail	135	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;