Gm12452 Pseudogene Detail

Summary

• Symbol
  Gm12452
• Name
  predicted gene 12452

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650619
  NCBI Gene: 666617
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:49412307-49412637 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.41 cM

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650619	pseudogene	Chr4:49412307-49412645 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012647	pseudogene	Chr4:47874455-47874785 (+)
A/J	MGP_AJ_G0012633	pseudogene	Chr4:46020998-46021328 (+)
AKR/J	MGP_AKRJ_G0012604	pseudogene	Chr4:47304689-47305019 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012876	pseudogene	Chr6:4266184-4266514 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012524	pseudogene	Chr4:54199823-54215620 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012255	pseudogene	Chr4:47333578-47333908 (+)

Homology

• Gene Tree
  Gm12452
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  2

• Ensembl
  ENSMUSG00000094082 (Evidence)
• NCBI Gene
  666617

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094082	Ensembl Gene Model | MGI Sequence Detail	331	C57BL/6J
transcript	ENSMUST00000117128	Ensembl | MGI Sequence Detail	331	Not Applicable
polypeptide	XP_036020493	RefSeq | MGI Sequence Detail	107	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;