Gm12406 Gene Detail

Summary

• Symbol
  Gm12406
• Name
  predicted gene 12406

• Feature Type
  lncRNA gene
• IDs
  MGI:3650626
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:41639378-41641416 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 21.80 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650626	lncRNA gene	Chr4:41639378-41641416 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003887	antisense lncRNA gene	Chr4:39595404-39597442 (+)
A/J	MGP_AJ_G0003867	antisense lncRNA gene	Chr4:38086187-38088235 (+)
AKR/J	MGP_AKRJ_G0003844	antisense lncRNA gene	Chr4:39079448-39081486 (+)
BALB/cJ	MGP_BALBcJ_G0003854	antisense lncRNA gene	Chr4:38420154-38422202 (+)
C3H/HeJ	MGP_C3HHeJ_G0003799	antisense lncRNA gene	Chr4:39620810-39622858 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003998	antisense lncRNA gene	Chr4:41061581-41063619 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003495	antisense lncRNA gene	Chr4:35740378-35742431 (+)
CAST/EiJ	MGP_CASTEiJ_G0003765	antisense lncRNA gene	Chr4:39298141-39300179 (+)
CBA/J	MGP_CBAJ_G0003793	antisense lncRNA gene	Chr4:42458458-42460506 (+)
DBA/2J	MGP_DBA2J_G0003808	antisense lncRNA gene	Chr4:38023314-38025362 (+)
FVB/NJ	MGP_FVBNJ_G0003828	antisense lncRNA gene	Chr4:37337817-37339865 (+)
LP/J	MGP_LPJ_G0003889	antisense lncRNA gene	Chr4:39666342-39668380 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003816	antisense lncRNA gene	Chr4:45751711-45753749 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003997	antisense lncRNA gene	Chr4:39187105-39189143 (+)
PWK/PhJ	MGP_PWKPhJ_G0003721	antisense lncRNA gene	Chr4:38038299-38040337 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003666	antisense lncRNA gene	Chr4:38919571-38921612 (+)
WSB/EiJ	MGP_WSBEiJ_G0003801	antisense lncRNA gene	Chr4:39173136-39175174 (+)

Homology

• Gene Tree
  Gm12406
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12406
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084761 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084761	Ensembl Gene Model | MGI Sequence Detail	2039	C57BL/6J
transcript	ENSMUST00000155382	Ensembl | MGI Sequence Detail	697	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gm12406:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36884	Chr4:41639358-41639405 (+)	4 bp