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Trav9d-1 Gene Detail
Summary
  • Symbol
    Trav9d-1
  • Name
    T cell receptor alpha variable 9D-1
  • Feature Type
    gene segment
  • IDs
    MGI:3650631
    NCBI Gene: 671927
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr14:53029773-53030233 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.09 cM
Strain
Comparison
more
  • SNPs within 2kb
    36 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650631
 gene segment Chr14:53029773-53030234 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002532
 gene segment Chr14:46844120-46844643 (+)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002621
 gene segment Chr14:48943984-48944555 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0002439
 gene segment Chr14:44092777-44093238 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0002484
 gene segment Chr14:50644552-50645089 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002642
 gene segment Chr14:46923616-47326430 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002358
 gene segment Chr14:43085315-43085776 (+)
WSB/EiJ MGP_WSBEiJ_G0002468
 gene segment Chr14:46916531-46916992 (+)



Homology
more
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Vertebrate Orthologs
    15
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV8-1, T cell receptor alpha variable 8-1
  • Synonyms
    TCRAV1S1, TCRAV8S1, TRAV81
  • Links
    NCBI Gene ID: 28685
    UniProt: A0A0A6YYK1

  • Chr Location
    14q11.2; chr14:21797287-21797886 (+)  GRCh38
  • Human Ortholog
    TRAV8-3, T cell receptor alpha variable 8-3
  • Synonyms
    TCRAV1S4, TCRAV8S3, TRAV83
  • Links
    NCBI Gene ID: 28683
    UniProt: A0A0A6YYJ7

  • Chr Location
    14q11.2; chr14:21852558-21853006 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    14
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 671927 NCBI Gene Model | MGI Sequence Detail 461 C57BL/6J ±  kb
polypeptide A0A075B699 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
Molecular
Reagents
less

  • Microarray probesets 2
References
more
  • Summaries
    All 10
  • Earliest
    J:71206 Haines BB, et al., Germline diversity of the expressed BALB/c VhJ558 gene family. Mol Immunol. 2001 Jan;38(1):9-18
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory