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Sft2d1rt Gene Detail
Summary
  • Symbol
    Sft2d1rt
  • Name
    SFT2 domain containing 1, retrotransposed
  • Synonyms
    Gm12166
Location &
Maps
more
  • Sequence Map
    Chr11:45942181-45943148 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 27.53 cM
Strain
Comparison
more
  • SNPs within 2kb
    126 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650635
 protein coding gene Chr11:45942181-45943175 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023133
 protein coding gene Chr17:5782430-5798698 (+)
A/J MGP_AJ_G0023101
 protein coding gene Chr17:5811549-5828571 (+)
AKR/J MGP_AKRJ_G0018124
 protein coding gene Chr11:44459870-44460816 (-)
BALB/cJ MGP_BALBcJ_G0023101
 protein coding gene Chr17:5613760-5630005 (+)
C3H/HeJ MGP_C3HHeJ_G0022864
 protein coding gene Chr17:5761356-5778319 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0021064
 protein coding gene Chr17:8535482-8551636 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0022836
 protein coding gene Chr17:6269495-6285740 (+)
DBA/2J MGP_DBA2J_G0022969
 protein coding gene Chr17:5479946-5496191 (+)
FVB/NJ MGP_FVBNJ_G0022938
 protein coding gene Chr17:5411613-5423781 (+)
LP/J MGP_LPJ_G0023040
 protein coding gene Chr17:5605988-5622845 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0023570
 protein coding gene Chr17:5763333-5780102 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0021956
 protein coding gene Chr17:5037366-5053500 (+)
WSB/EiJ MGP_WSBEiJ_G0022435
 protein coding gene Chr17:6071821-6089172 (+)



Homology
more
  • Human Ortholog
    SFT2D1, SFT2 domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SFT2D1, SFT2 domain containing 1
  • Synonyms
    C6orf83, pRGR1
  • Links
    NCBI Gene ID: 113402
    neXtProt AC: NX_Q8WV19
    UniProt: Q8WV19

  • Chr Location
    6q27; chr6:166319728-166342576 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000069899 Ensembl Gene Model | MGI Sequence Detail 968 C57BL/6J ±  kb
transcript ENSMUST00000093169 Ensembl | MGI Sequence Detail 958 Not Applicable  
polypeptide ENSMUSP00000090857 Ensembl | MGI Sequence Detail 159 Not Applicable  
For the selected sequence
Other
Accession IDs
less
MGI:7451315
References
more
  • Summaries
    All 9
    Phenotypes 3
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory