Gm12164 Pseudogene Detail

Summary

• Symbol
  Gm12164
• Name
  predicted gene 12164

• Feature Type
  pseudogene
• IDs
  MGI:3650637
  NCBI Gene: 633082
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:45720146-45720696 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 27.44 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650637	pseudogene	Chr11:45719938-45720873 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011226	pseudogene	Chr16:5287530-5288070 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011177	pseudogene	Chr16:5252950-5253490 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0011083	pseudogene	Chr16:5291202-5291742 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011062	pseudogene	Chr16:5642500-5643040 (-)
DBA/2J	MGP_DBA2J_G0010579	pseudogene	Chr11:42747456-42747910 (+)
FVB/NJ	MGP_FVBNJ_G0011111	pseudogene	Chr16:5005779-5006319 (-)
LP/J	MGP_LPJ_G0011201	pseudogene	Chr16:5263094-5263634 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011105	pseudogene	Chr16:5436612-5437152 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011457	pseudogene	Chr16:5203361-5203901 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12164
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12164
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000081251 (Evidence)
• NCBI Gene
  633082

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081251	Ensembl Gene Model | MGI Sequence Detail	551	C57BL/6J
transcript	ENSMUST00000121695	Ensembl | MGI Sequence Detail	551	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12164:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101066	Chr11:45719933-45719936 (+)	-211 bp