Gm12683 Pseudogene Detail

Summary

• Symbol
  Gm12683
• Name
  predicted gene 12683

• Feature Type
  pseudogene
• IDs
  MGI:3650644
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:99408289-99408703 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.71 cM

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650644	pseudogene	Chr4:99408289-99408703 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012784	pseudogene	Chr4:99765425-99765839 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0012740	pseudogene	Chr4:98621975-98622389 (-)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013082	pseudogene	Chr4:103530428-103530842 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011364	pseudogene	Chr4:91670259-91670672 (-)
CAST/EiJ	MGP_CASTEiJ_G0012362	pseudogene	Chr4:97226823-97227229 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012646	pseudogene	Chr4:96012204-96012618 (-)
FVB/NJ	MGP_FVBNJ_G0012650	pseudogene	Chr4:94858402-94858816 (-)
LP/J	MGP_LPJ_G0012721	pseudogene	Chr4:100072589-100073003 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012659	pseudogene	Chr4:112439584-112439998 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0012185	pseudogene	Chr4:94164716-94165129 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011994	pseudogene	Chr4:96315181-96315586 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12683
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12683
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000080803 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080803	Ensembl Gene Model | MGI Sequence Detail	415	C57BL/6J
transcript	ENSMUST00000117528	Ensembl | MGI Sequence Detail	415	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;