Gm12462 Gene Detail

Summary

• Symbol
  Gm12462
• Name
  predicted gene 12462

• Feature Type
  lncRNA gene
• IDs
  MGI:3650646
  NCBI Gene: 102632357
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:44681211-44685904 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.56 cM

Strain
Comparison

• SNPs within 2kb
  207 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650646	lncRNA gene	Chr4:44664415-44685904 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003893	antisense lncRNA gene	Chr4:42850202-42871064 (+)
A/J	MGP_AJ_G0003873	antisense lncRNA gene	Chr4:41324130-41345044 (+)
AKR/J	MGP_AKRJ_G0003850	antisense lncRNA gene	Chr4:42293915-42314729 (+)
BALB/cJ	MGP_BALBcJ_G0003860	antisense lncRNA gene	Chr4:41409155-41430153 (+)
C3H/HeJ	MGP_C3HHeJ_G0003806	antisense lncRNA gene	Chr4:42908313-42929177 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004007	antisense lncRNA gene	Chr4:44479369-44500287 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003501	antisense lncRNA gene	Chr4:38732354-38753460 (+)
CAST/EiJ	MGP_CASTEiJ_G0003771	antisense lncRNA gene	Chr4:42432011-42452894 (+)
CBA/J	MGP_CBAJ_G0003799	antisense lncRNA gene	Chr4:45846644-45867572 (+)
DBA/2J	MGP_DBA2J_G0003816	antisense lncRNA gene	Chr4:41221992-41242920 (+)
FVB/NJ	MGP_FVBNJ_G0003834	antisense lncRNA gene	Chr4:40448682-40469608 (+)
LP/J	MGP_LPJ_G0003895	antisense lncRNA gene	Chr4:42915948-42936812 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003822	antisense lncRNA gene	Chr4:49015206-49036169 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004003	antisense lncRNA gene	Chr4:42510914-42531826 (+)
PWK/PhJ	MGP_PWKPhJ_G0003726	antisense lncRNA gene	Chr4:41271927-41292953 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003672	antisense lncRNA gene	Chr4:42034345-42057056 (+)
WSB/EiJ	MGP_WSBEiJ_G0003806	antisense lncRNA gene	Chr4:42387209-42408298 (+)

Homology

• Gene Tree
  Gm12462
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000086211 (Evidence)
• NCBI Gene
  102632357

Representative Sequences			Length	Strain/Species
genomic	102632357	NCBI Gene Model | MGI Sequence Detail	4694	C57BL/6J
transcript	AK029677	GenBank | ENA | DDBJ | MGI Sequence Detail	3059	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;