Gm11801 Pseudogene Detail

Summary

• Symbol
  Gm11801
• Name
  predicted gene 11801

• Feature Type
  pseudogene
• IDs
  MGI:3650652
  NCBI Gene: 101055960
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:6539561-6540306 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 2.98 cM

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650652	pseudogene	Chr4:6512952-6540306 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012497	pseudogene	Chr4:3063986-3064731 (+)
A/J	MGP_AJ_G0012491	pseudogene	Chr4:3069292-3070037 (+)
AKR/J	MGP_AKRJ_G0012455	pseudogene	Chr4:3069051-3069796 (+)
BALB/cJ	MGP_BALBcJ_G0012474	pseudogene	Chr4:3025276-3045908 (+)
C3H/HeJ	MGP_C3HHeJ_G0012336	pseudogene	Chr4:3200683-3201428 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012787	pseudogene	Chr4:3292455-3293200 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011144	pseudogene	Chr4:2809920-2811834 (+)
CAST/EiJ	MGP_CASTEiJ_G0012104	pseudogene	Chr4:3070709-3071454 (+)
CBA/J	MGP_CBAJ_G0012316	pseudogene	Chr4:3304451-3305196 (+)
DBA/2J	MGP_DBA2J_G0012370	pseudogene	Chr4:3039787-3040532 (+)
FVB/NJ	MGP_FVBNJ_G0012371	pseudogene	Chr4:2925745-2926490 (+)
LP/J	MGP_LPJ_G0012444	pseudogene	Chr4:3119356-3120101 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012379	pseudogene	Chr4:3523283-3524028 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012791	pseudogene	Chr4:3052405-3053150 (+)
PWK/PhJ	MGP_PWKPhJ_G0011938	pseudogene	Chr4:3078829-3079574 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011759	pseudogene	Chr4:3000936-3002904 (+)
WSB/EiJ	MGP_WSBEiJ_G0012129	pseudogene	Chr4:3160600-3162483 (+)

Homology

• Gene Tree
  Gm11801
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000081388 (Evidence)
• NCBI Gene
  101055960

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081388	Ensembl Gene Model | MGI Sequence Detail	746	C57BL/6J
transcript	ENSMUST00000117807	Ensembl | MGI Sequence Detail	746	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;