Rpl9-ps3 Pseudogene Detail

Summary

• Symbol
  Rpl9-ps3
• Name
  ribosomal protein L9, pseudogene 3
• Synonyms
  Gm12211

• Feature Type
  pseudogene
• IDs
  MGI:3650675
  NCBI Gene: 546500
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:53392011-53392586 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 31.95 cM

Strain
Comparison

• SNPs within 2kb
  162 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650675	pseudogene	Chr11:53391966-53392688 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010704	pseudogene	Chr11:52886821-52887396 (+)
A/J	MGP_AJ_G0010702	pseudogene	Chr11:50902485-50903060 (+)
AKR/J	MGP_AKRJ_G0010661	pseudogene	Chr11:52567091-52567666 (+)
BALB/cJ	MGP_BALBcJ_G0010673	pseudogene	Chr11:51259828-51260403 (+)
C3H/HeJ	MGP_C3HHeJ_G0010587	pseudogene	Chr11:52531362-52531937 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010951	pseudogene	Chr11:54483053-54483628 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010411	pseudogene	Chr11:52579782-52580357 (+)
CBA/J	MGP_CBAJ_G0010562	pseudogene	Chr11:57057061-57057636 (+)
DBA/2J	MGP_DBA2J_G0010599	pseudogene	Chr11:50650530-50651105 (+)
FVB/NJ	MGP_FVBNJ_G0010615	pseudogene	Chr11:50290637-50291212 (+)
LP/J	MGP_LPJ_G0010687	pseudogene	Chr11:53339237-53339812 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010590	pseudogene	Chr11:58387664-58388239 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010923	pseudogene	Chr11:52592214-52592789 (+)
PWK/PhJ	MGP_PWKPhJ_G0010306	pseudogene	Chr11:51172785-51173360 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010115	pseudogene	Chr11:52415629-52416194 (+)
WSB/EiJ	MGP_WSBEiJ_G0010469	pseudogene	Chr11:52235046-52235621 (+)

Homology

• Gene Tree
  Rpl9-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl9-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000085718 (Evidence)
• NCBI Gene
  546500

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085718	Ensembl Gene Model | MGI Sequence Detail	576	C57BL/6J
transcript	ENSMUST00000119147	Ensembl | MGI Sequence Detail	576	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Rpl9-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr101407	Chr11:53391985-53391986 (+)	-25 bp