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Gm13629 Gene Detail
Summary
  • Symbol
    Gm13629
  • Name
    predicted gene 13629
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3650683
    NCBI Gene: 100038743
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:66271190-66377375 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 39.13 cM
Strain
Comparison
more
  • SNPs within 2kb
    3508 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650683
 lncRNA gene Chr2:66271190-66377816 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003575
 antisense lncRNA gene Chr2:66288776-66400024 (+)
A/J MGP_AJ_G0003556
 antisense lncRNA gene Chr2:63706849-63812769 (+)
AKR/J MGP_AKRJ_G0003534
 antisense lncRNA gene Chr2:65446686-65564220 (+)
BALB/cJ MGP_BALBcJ_G0003545
 antisense lncRNA gene Chr2:63892449-64007816 (+)
C3H/HeJ MGP_C3HHeJ_G0003492
 antisense lncRNA gene Chr2:65625028-65732115 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003683
 antisense lncRNA gene Chr2:68245428-68370328 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003192
 antisense lncRNA gene Chr2:61060245-61164749 (+)
CAST/EiJ MGP_CASTEiJ_G0003455
 antisense lncRNA gene Chr2:65702149-65824243 (+)
CBA/J MGP_CBAJ_G0003489
 antisense lncRNA gene Chr2:70791724-70915520 (+)
DBA/2J MGP_DBA2J_G0003497
 antisense lncRNA gene Chr2:63355873-63462407 (+)
FVB/NJ MGP_FVBNJ_G0003517
 antisense lncRNA gene Chr2:62773876-62884759 (+)
LP/J MGP_LPJ_G0003570
 antisense lncRNA gene Chr2:66124566-66232391 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003505
 antisense lncRNA gene Chr2:72765646-72903993 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003686
 antisense lncRNA gene Chr2:65512319-65625267 (+)
PWK/PhJ MGP_PWKPhJ_G0003410
 antisense lncRNA gene Chr2:63175615-63285023 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003355
 antisense lncRNA gene Chr2:65683808-65793509 (+)
WSB/EiJ MGP_WSBEiJ_G0003490
 antisense lncRNA gene Chr2:65886873-66011616 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    5
Sequences &
Gene Models
less
  • All Sequences
    36
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087301 Ensembl Gene Model | MGI Sequence Detail 106186 C57BL/6J ±  kb
transcript ENSMUST00000141149 Ensembl | MGI Sequence Detail 2061 Not Applicable  
polypeptide Q3V3K8 UniProt | EBI | MGI Sequence Detail 95 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 2
References
more
  • Summaries
    All 13
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:237720 Koenig J, et al., Regulation of Nav1.7: A Conserved SCN9A Natural Antisense Transcript Expressed in Dorsal Root Ganglia. PLoS One. 2015;10(6):e0128830
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory