Gm11500 Pseudogene Detail

Summary

• Symbol
  Gm11500
• Name
  predicted gene 11500

• Feature Type
  pseudogene
• IDs
  MGI:3650688
  NCBI Gene: 100416541
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:92660857-92661799 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 57.72 cM

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650688	pseudogene	Chr11:92660806-92661834 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010818	pseudogene	Chr11:94718199-94718799 (-)
A/J	MGP_AJ_G0010816	pseudogene	Chr11:90991753-90992552 (-)
AKR/J	MGP_AKRJ_G0010775	pseudogene	Chr11:93812418-93814151 (-)
BALB/cJ	MGP_BALBcJ_G0010792	pseudogene	Chr11:91430926-91432847 (-)
C3H/HeJ	MGP_C3HHeJ_G0010698	pseudogene	Chr11:93898259-93900075 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011065	pseudogene	Chr11:97736503-97738691 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009681	pseudogene	Chr11:88513361-88513983 (-)
CAST/EiJ	MGP_CASTEiJ_G0010520	pseudogene	Chr11:94566118-94567060 (-)
CBA/J	MGP_CBAJ_G0010670	pseudogene	Chr11:101764952-101767271 (-)
DBA/2J	MGP_DBA2J_G0010712	pseudogene	Chr11:90565567-90566410 (-)
FVB/NJ	MGP_FVBNJ_G0010729	pseudogene	Chr11:89997688-89998630 (-)
LP/J	MGP_LPJ_G0010801	pseudogene	Chr11:95282650-95283250 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010703	pseudogene	Chr11:101834045-101836292 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011043	pseudogene	Chr11:94013542-94014405 (-)
PWK/PhJ	MGP_PWKPhJ_G0010409	pseudogene	Chr11:91451188-91451788 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010226	pseudogene	Chr11:93686559-93687159 (-)
WSB/EiJ	MGP_WSBEiJ_G0010574	pseudogene	Chr11:93873082-93874181 (-)

Homology

• Gene Tree
  Gm11500
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11500
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081363 (Evidence)
• NCBI Gene
  100416541

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081363	Ensembl Gene Model | MGI Sequence Detail	943	C57BL/6J
transcript	ENSMUST00000118237	Ensembl | MGI Sequence Detail	601	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 1
• Earliest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307