Gm12538 Pseudogene Detail

Summary

• Symbol
  Gm12538
• Name
  predicted gene 12538

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3650715
  NCBI Gene: 619973
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:57413711-57414196 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 31.66 cM

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650715	pseudogene	Chr4:57413656-57414269 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012675	pseudogene	Chr4:56207821-56208932 (-)
A/J	MGP_AJ_G0012664	pseudogene	Chr4:54069300-54069785 (-)
AKR/J	MGP_AKRJ_G0012634	pseudogene	Chr4:55559497-55559982 (-)
BALB/cJ	MGP_BALBcJ_G0012647	pseudogene	Chr4:54228050-54228535 (-)
C3H/HeJ	MGP_C3HHeJ_G0012506	pseudogene	Chr4:56071841-56072326 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012973	pseudogene	Chr4:58214612-58215097 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009698	pseudogene	Chr11:94371096-94372507 (-)
CAST/EiJ	MGP_CASTEiJ_G0012262	pseudogene	Chr4:55790125-55790586 (-)
CBA/J	MGP_CBAJ_G0012485	pseudogene	Chr4:60222925-60223410 (-)
DBA/2J	MGP_DBA2J_G0012544	pseudogene	Chr4:53969309-53970509 (-)
FVB/NJ	MGP_FVBNJ_G0012545	pseudogene	Chr4:53197571-53198056 (-)
LP/J	MGP_LPJ_G0012616	pseudogene	Chr4:56315872-56316357 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012553	pseudogene	Chr4:63350325-63350810 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012976	pseudogene	Chr4:55746908-55747393 (-)
PWK/PhJ	MGP_PWKPhJ_G0012089	pseudogene	Chr4:53969513-53969978 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010245	pseudogene	Chr11:99968322-99969668 (-)
WSB/EiJ	MGP_WSBEiJ_G0012284	pseudogene	Chr4:55700229-55700714 (-)

Homology

• Gene Tree
  Gm12538
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000081540 (Evidence)
• NCBI Gene
  619973

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081540	Ensembl Gene Model | MGI Sequence Detail	486	C57BL/6J
transcript	ENSMUST00000120064	Ensembl | MGI Sequence Detail	486	Not Applicable
polypeptide	XP_036020554	RefSeq | MGI Sequence Detail	161	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;