Gm11506 Pseudogene Detail

Summary

• Symbol
  Gm11506
• Name
  predicted gene 11506

• Feature Type
  pseudogene
• IDs
  MGI:3650724
  NCBI Gene: 118567951
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:93585908-93586377 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.81 cM

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650724	pseudogene	Chr11:93585908-93586429 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010821	pseudogene	Chr11:95717175-95717644 (+)
A/J	MGP_AJ_G0010819	pseudogene	Chr11:91930933-91931396 (+)
AKR/J	MGP_AKRJ_G0010778	pseudogene	Chr11:94777311-94777774 (+)
BALB/cJ	MGP_BALBcJ_G0010795	pseudogene	Chr11:92361486-92361955 (+)
C3H/HeJ	MGP_C3HHeJ_G0010701	pseudogene	Chr11:94875071-94875534 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011068	pseudogene	Chr11:98727645-98728114 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009684	pseudogene	Chr11:89431182-89431635 (+)
CAST/EiJ	MGP_CASTEiJ_G0010523	pseudogene	Chr11:95546235-95546704 (+)
CBA/J	MGP_CBAJ_G0010673	pseudogene	Chr11:102823305-102823768 (+)
DBA/2J	MGP_DBA2J_G0010715	pseudogene	Chr11:91491594-91492063 (+)
FVB/NJ	MGP_FVBNJ_G0010732	pseudogene	Chr11:90922123-90922592 (+)
LP/J	MGP_LPJ_G0010804	pseudogene	Chr11:96268424-96268893 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010706	pseudogene	Chr11:102878316-102878785 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011046	pseudogene	Chr11:94989811-94990280 (+)
PWK/PhJ	MGP_PWKPhJ_G0010412	pseudogene	Chr11:92416316-92416779 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010229	pseudogene	Chr11:94680219-94680682 (+)
WSB/EiJ	MGP_WSBEiJ_G0010577	pseudogene	Chr11:94866082-94866551 (+)

Homology

• Gene Tree
  Gm11506
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11506
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000080872 (Evidence)
• NCBI Gene
  118567951

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080872	Ensembl Gene Model | MGI Sequence Detail	470	C57BL/6J
transcript	ENSMUST00000122414	Ensembl | MGI Sequence Detail	470	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 1
• Earliest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307