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Gm13872 Gene Detail
Summary
  • Symbol
    Gm13872
  • Name
    predicted gene 13872
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3650731
    NCBI Gene: 102637542
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:102573996-102577105 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 54.13 cM
Strain
Comparison
more
  • SNPs within 2kb
    195 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650731
 lncRNA gene Chr2:102568252-102577105 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003607
 antisense lncRNA gene Chr2:104666545-104676442 (-)
A/J MGP_AJ_G0003589
 antisense lncRNA gene Chr2:100366862-100375715 (-)
AKR/J MGP_AKRJ_G0003567
 antisense lncRNA gene Chr2:103079638-103088469 (-)
BALB/cJ MGP_BALBcJ_G0003578
 antisense lncRNA gene Chr2:100641352-100650205 (-)
C3H/HeJ MGP_C3HHeJ_G0003525
 antisense lncRNA gene Chr2:103446556-103455389 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003716
 antisense lncRNA gene Chr2:108191363-108200216 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003225
 antisense lncRNA gene Chr2:96041496-96050240 (-)
CAST/EiJ MGP_CASTEiJ_G0003488
 antisense lncRNA gene Chr2:103886285-103895131 (-)
CBA/J MGP_CBAJ_G0003522
 antisense lncRNA gene Chr2:111892358-111901211 (-)
DBA/2J MGP_DBA2J_G0003530
 antisense lncRNA gene Chr2:99928006-99936859 (-)
FVB/NJ MGP_FVBNJ_G0003550
 antisense lncRNA gene Chr2:98929005-98937858 (-)
LP/J MGP_LPJ_G0003607
 antisense lncRNA gene Chr2:104817679-104826532 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003538
 antisense lncRNA gene Chr2:115852521-115861374 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003718
 antisense lncRNA gene Chr2:103297752-103306585 (-)
PWK/PhJ MGP_PWKPhJ_G0003443
 antisense lncRNA gene Chr2:99425964-99435265 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003387
 antisense lncRNA gene Chr2:102520221-102529072 (-)
WSB/EiJ MGP_WSBEiJ_G0003522
 antisense lncRNA gene Chr2:104001731-104010585 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    4 involving Gm13872
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 102637542 NCBI Gene Model | MGI Sequence Detail 3110 C57BL/6J ±  kb
transcript NR_153852 RefSeq | MGI Sequence Detail 1644 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 15
    Phenotypes 6
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory