Gm12716 Pseudogene Detail

Summary

• Symbol
  Gm12716
• Name
  predicted gene 12716

• Feature Type
  pseudogene
• IDs
  MGI:3650738
  NCBI Gene: 665451
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:103400571-103401924 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 47.68 cM

Strain
Comparison

• SNPs within 2kb
  194 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650738	pseudogene	Chr4:103400373-103401960 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012798	pseudogene	Chr4:104006003-104007356 (-)
A/J	MGP_AJ_G0012782	pseudogene	Chr4:100342619-100343972 (-)
AKR/J	MGP_AKRJ_G0012752	pseudogene	Chr4:102786317-102787670 (-)
BALB/cJ	MGP_BALBcJ_G0012763	pseudogene	Chr4:100542204-100543557 (-)
C3H/HeJ	MGP_C3HHeJ_G0012619	pseudogene	Chr4:103551569-103552922 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013092	pseudogene	Chr4:107894202-107895555 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009354	pseudogene	Chr1:161496572-161502617 (-)
CAST/EiJ	MGP_CASTEiJ_G0012372	pseudogene	Chr4:101310686-101312039 (-)
CBA/J	MGP_CBAJ_G0012595	pseudogene	Chr4:111328101-111329454 (-)
DBA/2J	MGP_DBA2J_G0012658	pseudogene	Chr4:99994952-99996305 (-)
FVB/NJ	MGP_FVBNJ_G0012661	pseudogene	Chr4:98842351-98843704 (-)
LP/J	MGP_LPJ_G0012732	pseudogene	Chr4:104235665-104237018 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012671	pseudogene	Chr4:116753908-116755261 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013103	pseudogene	Chr4:103006144-103007497 (-)
PWK/PhJ	MGP_PWKPhJ_G0012196	pseudogene	Chr4:98201430-98202777 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012005	pseudogene	Chr4:100401852-100403201 (-)
WSB/EiJ	MGP_WSBEiJ_G0012400	pseudogene	Chr4:103166478-103167831 (-)

Homology

• Gene Tree
  Gm12716
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12716
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081584 (Evidence)
• NCBI Gene
  665451

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081584	Ensembl Gene Model | MGI Sequence Detail	1354	C57BL/6J
transcript	ENSMUST00000120606	Ensembl | MGI Sequence Detail	1354	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;