Gm11731 Gene Detail

Summary

• Symbol
  Gm11731
• Name
  predicted gene 11731

• Feature Type
  lncRNA gene
• IDs
  MGI:3650739
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:116949251-116951094 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 81.57 cM

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650739	lncRNA gene	Chr11:116949251-116951094 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005322	lincRNA gene	Chr11:121252066-121253930 (+)
A/J	MGP_AJ_G0005305	lincRNA gene	Chr11:115895546-115897431 (+)
AKR/J	MGP_AKRJ_G0005284	lincRNA gene	Chr11:119435046-119436882 (+)
BALB/cJ	MGP_BALBcJ_G0005287	lincRNA gene	Chr11:116278257-116280051 (+)
C3H/HeJ	MGP_C3HHeJ_G0005236	lincRNA gene	Chr11:119710053-119711883 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005439	lincRNA gene	Chr11:124969880-124971713 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004829	lincRNA gene	Chr11:112917977-112919847 (+)
CAST/EiJ	MGP_CASTEiJ_G0005183	lincRNA gene	Chr11:121131049-121132851 (+)
CBA/J	MGP_CBAJ_G0005225	lincRNA gene	Chr11:129860660-129862517 (+)
DBA/2J	MGP_DBA2J_G0005243	lincRNA gene	Chr11:115309701-115311544 (+)
FVB/NJ	MGP_FVBNJ_G0005268	lincRNA gene	Chr11:114907112-114908947 (+)
LP/J	MGP_LPJ_G0005324	lincRNA gene	Chr11:121593065-121594898 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005250	lincRNA gene	Chr11:128905895-128907726 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005443	lincRNA gene	Chr11:120068787-120070630 (+)
PWK/PhJ	MGP_PWKPhJ_G0005132	lincRNA gene	Chr11:116650566-116652369 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005053	lincRNA gene	Chr11:119801838-119803688 (+)
WSB/EiJ	MGP_WSBEiJ_G0005231	lincRNA gene	Chr11:120027314-120029186 (+)

Homology

• Gene Tree
  Gm11731
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085104 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085104	Ensembl Gene Model | MGI Sequence Detail	1844	C57BL/6J
transcript	ENSMUST00000139704	Ensembl | MGI Sequence Detail	670	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;