Gm12635 Pseudogene Detail

Summary

• Symbol
  Gm12635
• Name
  predicted gene 12635

• Feature Type
  pseudogene
• IDs
  MGI:3650766
  NCBI Gene: 100417247
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:90341111-90341862 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 42.36 cM

Strain
Comparison

• SNPs within 2kb
  166 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650766	pseudogene	Chr4:90341110-90342034 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012756	pseudogene	Chr4:90437835-90438593 (+)
A/J	MGP_AJ_G0012742	pseudogene	Chr4:87252300-87253051 (+)
AKR/J	MGP_AKRJ_G0012713	pseudogene	Chr4:89382689-89383440 (+)
BALB/cJ	MGP_BALBcJ_G0012722	pseudogene	Chr4:87498402-87499153 (+)
C3H/HeJ	MGP_C3HHeJ_G0012581	pseudogene	Chr4:90161361-90162112 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013053	pseudogene	Chr4:93854978-93855729 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012335	pseudogene	Chr4:88008451-88009202 (+)
CBA/J	MGP_CBAJ_G0012557	pseudogene	Chr4:96744407-96745158 (+)
DBA/2J	MGP_DBA2J_G0012620	pseudogene	Chr4:87005163-87005914 (+)
FVB/NJ	MGP_FVBNJ_G0012623	pseudogene	Chr4:85920864-85921615 (+)
LP/J	MGP_LPJ_G0012693	pseudogene	Chr4:90725203-90725961 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012632	pseudogene	Chr4:101851390-101852141 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013060	pseudogene	Chr4:89585068-89585819 (+)
PWK/PhJ	MGP_PWKPhJ_G0012158	pseudogene	Chr4:85273732-85274490 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012361	pseudogene	Chr4:89772575-89773326 (+)

Homology

• Gene Tree
  Gm12635
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm12635
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081563 (Evidence)
• NCBI Gene
  100417247

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081563	Ensembl Gene Model | MGI Sequence Detail	752	C57BL/6J
transcript	ENSMUST00000117285	Ensembl | MGI Sequence Detail	752	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48