Gm12391 Pseudogene Detail

Summary

• Symbol
  Gm12391
• Name
  predicted gene 12391

• Feature Type
  pseudogene
• IDs
  MGI:3650809
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:40678332-40678778 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 20.46 cM

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650809	pseudogene	Chr4:40678332-40678778 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012622	pseudogene	Chr4:38554932-38555378 (+)
A/J	MGP_AJ_G0012613	pseudogene	Chr4:37118280-37118726 (+)
AKR/J	MGP_AKRJ_G0012581	pseudogene	Chr4:38047128-38047574 (+)
BALB/cJ	MGP_BALBcJ_G0012597	pseudogene	Chr4:37441986-37442432 (+)
C3H/HeJ	MGP_C3HHeJ_G0012459	pseudogene	Chr4:38591735-38592181 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012915	pseudogene	Chr4:39994086-39994532 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011235	pseudogene	Chr4:34775425-34775889 (+)
CAST/EiJ	MGP_CASTEiJ_G0012214	pseudogene	Chr4:38253746-38254192 (+)
CBA/J	MGP_CBAJ_G0012437	pseudogene	Chr4:41335721-41336167 (+)
DBA/2J	MGP_DBA2J_G0012495	pseudogene	Chr4:37036556-37037002 (+)
FVB/NJ	MGP_FVBNJ_G0012496	pseudogene	Chr4:36369102-36369548 (+)
LP/J	MGP_LPJ_G0012564	pseudogene	Chr4:38622106-38622552 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012499	pseudogene	Chr4:44698712-44699158 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012915	pseudogene	Chr4:38162618-38163064 (+)
PWK/PhJ	MGP_PWKPhJ_G0012043	pseudogene	Chr4:37030920-37031366 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011859	pseudogene	Chr4:37882727-37884656 (+)
WSB/EiJ	MGP_WSBEiJ_G0012238	pseudogene	Chr4:38115358-38115804 (+)

Homology

• Gene Tree
  Gm12391
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12391
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081720 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081720	Ensembl Gene Model | MGI Sequence Detail	447	C57BL/6J
transcript	ENSMUST00000117626	Ensembl | MGI Sequence Detail	282	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;