Gm13215 Pseudogene Detail

Summary

• Symbol
  Gm13215
• Name
  predicted gene 13215

• Feature Type
  pseudogene
• IDs
  MGI:3650813
  NCBI Gene: 664894
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:131875724-131876195 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 64.85 cM

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650813	pseudogene	Chr4:131875682-131876241 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012875	pseudogene	Chr4:128700061-128700532 (-)
AKR/J	MGP_AKRJ_G0012845	pseudogene	Chr4:132306594-132307065 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012710	pseudogene	Chr4:132557901-132558592 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013193	pseudogene	Chr4:139105034-139105505 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012263	pseudogene	Chr7:124974467-124974938 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012748	pseudogene	Chr4:129126588-129127059 (-)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012765	pseudogene	Chr4:147285389-147285860 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013208	pseudogene	Chr4:132712294-132714566 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0012093	pseudogene	Chr4:128583367-128583839 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13215
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm13215
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000081394 (Evidence)
• NCBI Gene
  664894

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081394	Ensembl Gene Model | MGI Sequence Detail	472	C57BL/6J
transcript	ENSMUST00000117559	Ensembl | MGI Sequence Detail	472	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13215:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43638	Chr4:131876228-131876242 (-)	-40 bp