Mup-ps23 Pseudogene Detail

Summary

• Symbol
  Mup-ps23
• Name
  major urinary protein, pseudogene 23
• Synonyms
  Gm12574

• Feature Type
  pseudogene
• IDs
  MGI:3650815
  NCBI Gene: 435785
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:61773641-61774791 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 32.90 cM

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650815	pseudogene	Chr4:61773473-61774868 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012683	pseudogene	Chr4:60824043-60825305 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0012641	pseudogene	Chr4:58268848-58270110 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012513	pseudogene	Chr4:60687624-60688886 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012982	pseudogene	Chr4:62868318-62869467 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011285	pseudogene	Chr4:55848443-55849764 (-)
CAST/EiJ	MGP_CASTEiJ_G0012269	pseudogene	Chr4:58628335-58649332 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012551	pseudogene	Chr4:58457691-58458953 (-)
FVB/NJ	MGP_FVBNJ_G0012552	pseudogene	Chr4:55790116-55791378 (+)
LP/J	MGP_LPJ_G0012623	pseudogene	Chr4:60941705-60942866 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012985	pseudogene	Chr4:60317091-60318353 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0011909	pseudogene	Chr4:57822409-57856395 (-)
WSB/EiJ	MGP_WSBEiJ_G0012291	pseudogene	Chr4:60326061-60327210 (-)

Homology

• Gene Tree
  Mup-ps23
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Mup-ps23
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000081755 (Evidence)
• NCBI Gene
  435785

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081755	Ensembl Gene Model | MGI Sequence Detail	1151	C57BL/6J
transcript	ENSMUST00000118063	Ensembl | MGI Sequence Detail	630	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:334686 Yang H, et al., Mup-knockout mice generated through CRISPR/Cas9-mediated deletion for use in urinary protein analysis. Acta Biochim Biophys Sin (Shanghai). 2016 May;48(5):468-73
• Latest
  J:334590 Greve S, et al., The major urinary protein gene cluster knockout mouse as a novel model for translational metabolism research. Sci Rep. 2022 Aug 1;12(1):13161

TSS for Mup-ps23:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41964	Chr4:61774025-61774030 (-)	763 bp