Gm12167 Gene Detail

Summary

• Symbol
  Gm12167
• Name
  predicted gene 12167

• Feature Type
  lncRNA gene
• IDs
  MGI:3650837
  NCBI Gene: 100503965
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:46233114-46235847 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 27.77 cM

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650837	lncRNA gene	Chr11:46233114-46235847 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002945	antisense lncRNA gene	Chr11:45257229-45259958 (+)
A/J	MGP_AJ_G0002922	antisense lncRNA gene	Chr11:43520788-43523517 (+)
AKR/J	MGP_AKRJ_G0002903	antisense lncRNA gene	Chr11:44770053-44772745 (+)
BALB/cJ	MGP_BALBcJ_G0002910	antisense lncRNA gene	Chr11:43679207-43681936 (+)
C3H/HeJ	MGP_C3HHeJ_G0002865	antisense lncRNA gene	Chr11:44814086-44816805 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003052	antisense lncRNA gene	Chr11:46602094-46604827 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002594	antisense lncRNA gene	Chr11:41498209-41500906 (+)
CAST/EiJ	MGP_CASTEiJ_G0002837	antisense lncRNA gene	Chr11:44936389-44939070 (+)
CBA/J	MGP_CBAJ_G0002862	antisense lncRNA gene	Chr11:48784774-48787531 (+)
DBA/2J	MGP_DBA2J_G0002869	antisense lncRNA gene	Chr11:43265118-43267881 (+)
FVB/NJ	MGP_FVBNJ_G0002887	antisense lncRNA gene	Chr11:42942129-42944819 (+)
LP/J	MGP_LPJ_G0002944	antisense lncRNA gene	Chr11:45506003-45508732 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002876	antisense lncRNA gene	Chr11:50306837-50309609 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003055	antisense lncRNA gene	Chr11:44932581-44935323 (+)
PWK/PhJ	MGP_PWKPhJ_G0002795	antisense lncRNA gene	Chr11:43352505-43355354 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002743	antisense lncRNA gene	Chr11:44749334-44751953 (+)
WSB/EiJ	MGP_WSBEiJ_G0002866	antisense lncRNA gene	Chr11:44630084-44632813 (+)

Homology

• Gene Tree
  Gm12167
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm12167
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000085853 (Evidence)
• NCBI Gene
  100503965

Representative Sequences			Length	Strain/Species
genomic	100503965	NCBI Gene Model | MGI Sequence Detail	2734	C57BL/6J
transcript	NR_152253	RefSeq | MGI Sequence Detail	595	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14