Gm12701 Gene Detail

Summary

• Symbol
  Gm12701
• Name
  predicted gene 12701

• Feature Type
  lncRNA gene
• IDs
  MGI:3650875
  NCBI Gene: 105244634
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:99976818-99978038 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.71 cM

Strain
Comparison

• SNPs within 2kb
  173 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650875	lncRNA gene	Chr4:99976818-100010522 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037013	sense intronic lncRNA gene	Chr4:100366549-100367769 (+)
A/J	MGP_AJ_G0037001	sense intronic lncRNA gene	Chr4:96861329-96862549 (+)
AKR/J	MGP_AKRJ_G0036949	sense intronic lncRNA gene	Chr4:99204348-99205568 (+)
BALB/cJ	MGP_BALBcJ_G0036992	sense intronic lncRNA gene	Chr4:97101878-97103098 (+)
C3H/HeJ	MGP_C3HHeJ_G0036679	sense intronic lncRNA gene	Chr4:100029861-100031081 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037505	sense intronic lncRNA gene	Chr4:104178945-104180165 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034556	sense intronic lncRNA gene	Chr4:92215646-92216890 (+)
CAST/EiJ	MGP_CASTEiJ_G0035867	sense intronic lncRNA gene	Chr4:97818113-97819334 (+)
CBA/J	MGP_CBAJ_G0036654	sense intronic lncRNA gene	Chr4:107426646-107427866 (+)
DBA/2J	MGP_DBA2J_G0036829	sense intronic lncRNA gene	Chr4:96578857-96580077 (+)
FVB/NJ	MGP_FVBNJ_G0036779	sense intronic lncRNA gene	Chr4:95416016-95417236 (+)
LP/J	MGP_LPJ_G0036876	sense intronic lncRNA gene	Chr4:100671609-100672829 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036787	sense intronic lncRNA gene	Chr4:113035689-113036909 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037622	sense intronic lncRNA gene	Chr4:99465475-99466696 (+)
PWK/PhJ	MGP_PWKPhJ_G0035559	sense intronic lncRNA gene	Chr4:94739064-94740291 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035368	sense intronic lncRNA gene	Chr4:96912788-96914024 (+)
WSB/EiJ	MGP_WSBEiJ_G0036067	sense intronic lncRNA gene	Chr4:99627960-99629180 (+)

Homology

• Gene Tree
  Gm12701
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12701
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086385 (Evidence)
• NCBI Gene
  105244634

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086385	Ensembl Gene Model | MGI Sequence Detail	1221	C57BL/6J
transcript	ENSMUST00000134206	Ensembl | MGI Sequence Detail	659	Not Applicable

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12