Gm13025 Gene Detail

Summary

• Symbol
  Gm13025
• Name
  predicted gene 13025

• Feature Type
  lncRNA gene
• IDs
  MGI:3650883
  NCBI Gene: 102637546
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:140407064-140411928 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 72.06 cM

Strain
Comparison

• SNPs within 2kb
  300 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650883	lncRNA gene	Chr4:140407056-140413422 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006550	lincRNA gene	Chr4:143621695-143626030 (+)
A/J	MGP_AJ_G0006542	lincRNA gene	Chr4:137421233-137425879 (+)
AKR/J	MGP_AKRJ_G0006516	lincRNA gene	Chr4:141386465-141392748 (+)
BALB/cJ	MGP_BALBcJ_G0006516	lincRNA gene	Chr4:138113089-138121326 (+)
C3H/HeJ	MGP_C3HHeJ_G0006466	lincRNA gene	Chr4:141776438-141781707 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006682	lincRNA gene	Chr4:148679870-148684420 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005959	lincRNA gene	Chr4:130355878-130359268 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0006449	lincRNA gene	Chr4:152924087-152928978 (+)
DBA/2J	MGP_DBA2J_G0006471	lincRNA gene	Chr4:137823209-137828273 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0006551	lincRNA gene	Chr4:143677944-143682702 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0006686	lincRNA gene	Chr4:141911093-141916791 (+)
PWK/PhJ	MGP_PWKPhJ_G0006335	lincRNA gene	Chr4:134694629-134699431 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006244	lincRNA gene	Chr4:137717837-137729980 (+)
WSB/EiJ	MGP_WSBEiJ_G0006443	lincRNA gene	Chr4:142197316-142202945 (+)

Homology

• Gene Tree
  Gm13025
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  2
• Gene trapped
  4
• Targeted
  1
• Genomic Mutations
  3 involving Gm13025
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000086159 (Evidence)
• NCBI Gene
  102637546

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086159	Ensembl Gene Model | MGI Sequence Detail	4865	C57BL/6J
transcript	ENSMUST00000141469	Ensembl | MGI Sequence Detail	1163	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 13

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9