Gm11997 Pseudogene Detail

Summary

• Symbol
  Gm11997
• Name
  predicted gene 11997

• Feature Type
  pseudogene
• IDs
  MGI:3650899
  NCBI Gene: 108167854
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:10326770-10327082 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 6.16 cM

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650899	pseudogene	Chr11:10326770-10335266 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010585	pseudogene	Chr11:7636306-7636618 (-)
A/J	MGP_AJ_G0010577	pseudogene	Chr11:7343096-7343408 (-)
AKR/J	MGP_AKRJ_G0010538	pseudogene	Chr11:7641454-7641766 (-)
BALB/cJ	MGP_BALBcJ_G0010553	pseudogene	Chr11:7356557-7356869 (-)
C3H/HeJ	MGP_C3HHeJ_G0010474	pseudogene	Chr11:7567664-7567976 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010823	pseudogene	Chr11:7900060-7900372 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009489	pseudogene	Chr11:6986618-6986931 (-)
CAST/EiJ	MGP_CASTEiJ_G0010298	pseudogene	Chr11:7584965-7585277 (-)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0010477	pseudogene	Chr11:7310921-7311233 (-)
FVB/NJ	MGP_FVBNJ_G0010494	pseudogene	Chr11:7226484-7226796 (-)
LP/J	MGP_LPJ_G0010566	pseudogene	Chr11:7701383-7701695 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010470	pseudogene	Chr11:8094991-8095303 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010800	pseudogene	Chr11:7735239-7735548 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010012	pseudogene	Chr11:7556249-7556561 (-)
WSB/EiJ	MGP_WSBEiJ_G0010357	pseudogene	Chr11:7497030-7497342 (-)

Homology

• Gene Tree
  Gm11997
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000084045 (Evidence)
• NCBI Gene
  108167854

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084045	Ensembl Gene Model | MGI Sequence Detail	313	C57BL/6J
transcript	ENSMUST00000118697	Ensembl | MGI Sequence Detail	313	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;