Gm11999 MGI Mouse Gene Detail - MGI:3650903

Symbol

Gm11999
Name

predicted gene 11999

Feature Type

lncRNA gene
IDs

MGI:3650903
NCBI Gene: 102631840
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr11:11592203-11635400 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 7.00 cM

SNPs within 2kb

1313 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650903	lncRNA gene	Chr11:11592203-11635635 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015153	unclassified non-coding RNA gene	Chr11:8927059-8973091 (-)
A/J	MGP_AJ_G0015127	unclassified non-coding RNA gene	Chr11:8615187-8658683 (-)
AKR/J	MGP_AKRJ_G0015090	unclassified non-coding RNA gene	Chr11:8981293-9027029 (-)
BALB/cJ	MGP_BALBcJ_G0015090	unclassified non-coding RNA gene	Chr11:8637205-8680541 (-)
C3H/HeJ	MGP_C3HHeJ_G0014913	unclassified non-coding RNA gene	Chr11:8879557-8926615 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015546	unclassified non-coding RNA gene	Chr11:9229501-9276089 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013292	unclassified non-coding RNA gene	Chr11:8159488-8201739 (-)
CAST/EiJ	MGP_CASTEiJ_G0014467	unclassified non-coding RNA gene	Chr11:8882053-8930667 (-)
CBA/J	MGP_CBAJ_G0014892	unclassified non-coding RNA gene	Chr11:9904863-9952863 (-)
DBA/2J	MGP_DBA2J_G0014985	unclassified non-coding RNA gene	Chr11:8549562-8593486 (-)
FVB/NJ	MGP_FVBNJ_G0014996	unclassified non-coding RNA gene	Chr11:8455973-8502956 (-)
LP/J	MGP_LPJ_G0015067	unclassified non-coding RNA gene	Chr11:9035921-9082074 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015023	unclassified non-coding RNA gene	Chr11:9620909-9668144 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015585	unclassified non-coding RNA gene	Chr11:8998302-9042592 (-)
PWK/PhJ	MGP_PWKPhJ_G0014259	unclassified non-coding RNA gene	Chr11:8579345-8624334 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014047	unclassified non-coding RNA gene	Chr11:8836292-8887967 (-)
WSB/EiJ	MGP_WSBEiJ_G0014570	unclassified non-coding RNA gene	Chr11:8761619-8806749 (-)

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Gene Tree

Gm11999

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

Expression Atlas

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All Sequences

24
RefSeq

1

Ensembl

ENSMUSG00000085652 (Evidence)
NCBI Gene

102631840

Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000085652	Ensembl Gene Model \| MGI Sequence Detail	43198	C57BL/6J	± kb
	transcript	ENSMUST00000145789	Ensembl \| MGI Sequence Detail	813	Not Applicable

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All nucleic 1

cDNA 1

Summaries

All 7
Earliest

J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
Latest

J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11999:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106871	Chr11:11636705-11636736 (-)	-1,321 bp
Tssr106870	Chr11:11635624-11635655 (-)	-240 bp
Tssr106869	Chr11:11625214-11625221 (-)	10,182 bp
Tssr106868	Chr11:11607226-11607262 (-)	28,156 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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