Gm13592 Pseudogene Detail

Summary

• Symbol
  Gm13592
• Name
  predicted gene 13592

• Feature Type
  pseudogene
• IDs
  MGI:3650915
  NCBI Gene: 383705
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:65107761-65108770 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 38.44 cM

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650915	pseudogene	Chr2:65107743-65108971 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011675	pseudogene	Chr2:65070771-65071779 (+)
A/J	MGP_AJ_G0011670	pseudogene	Chr2:62570483-62571492 (+)
AKR/J	MGP_AKRJ_G0011636	pseudogene	Chr2:64240080-64241089 (+)
BALB/cJ	MGP_BALBcJ_G0011651	pseudogene	Chr2:62718949-62719958 (+)
C3H/HeJ	MGP_C3HHeJ_G0011537	pseudogene	Chr2:64408612-64409621 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011945	pseudogene	Chr2:66990034-66991043 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010464	pseudogene	Chr2:59940128-59941135 (+)
CAST/EiJ	MGP_CASTEiJ_G0011327	pseudogene	Chr2:64458648-64459659 (+)
CBA/J	MGP_CBAJ_G0011510	pseudogene	Chr2:69525108-69526117 (+)
DBA/2J	MGP_DBA2J_G0011565	pseudogene	Chr2:62193500-62194469 (+)
FVB/NJ	MGP_FVBNJ_G0011567	pseudogene	Chr2:61614859-61615869 (+)
LP/J	MGP_LPJ_G0011631	pseudogene	Chr2:64886411-64887420 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011565	pseudogene	Chr2:71470567-71471575 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011937	pseudogene	Chr2:64299228-64300237 (+)
PWK/PhJ	MGP_PWKPhJ_G0011186	pseudogene	Chr2:62015943-62017066 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011006	pseudogene	Chr2:64613339-64614346 (+)
WSB/EiJ	MGP_WSBEiJ_G0011353	pseudogene	Chr2:64665303-64666311 (+)

Homology

• Gene Tree
  Gm13592
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13592
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083707 (Evidence)
• NCBI Gene
  383705

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083707	Ensembl Gene Model | MGI Sequence Detail	1010	C57BL/6J
transcript	ENSMUST00000118148	Ensembl | MGI Sequence Detail	1010	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13592:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17980	Chr2:65107685-65107686 (+)	-75 bp