Gm11838 Pseudogene Detail

Summary

• Symbol
  Gm11838
• Name
  predicted gene 11838

• Feature Type
  pseudogene
• IDs
  MGI:3650938
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:14766335-14766565 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 6.36 cM

Strain
Comparison

• SNPs within 2kb
  105 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650938	pseudogene	Chr4:14766335-14766565 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012520	pseudogene	Chr4:11567301-11567531 (+)
A/J	MGP_AJ_G0012514	pseudogene	Chr4:11318504-11318734 (+)
AKR/J	MGP_AKRJ_G0012478	pseudogene	Chr4:11482295-11482525 (+)
BALB/cJ	MGP_BALBcJ_G0012498	pseudogene	Chr4:11220049-11220279 (+)
C3H/HeJ	MGP_C3HHeJ_G0012358	pseudogene	Chr4:11628900-11629130 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012814	pseudogene	Chr4:12068548-12068778 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010026	pseudogene	Chr15:50521127-50521357 (+)
CAST/EiJ	MGP_CASTEiJ_G0010870	pseudogene	Chr15:55537957-55538187 (+)
CBA/J	MGP_CBAJ_G0012337	pseudogene	Chr4:12324574-12324804 (+)
DBA/2J	MGP_DBA2J_G0012393	pseudogene	Chr4:11168486-11168716 (+)
FVB/NJ	MGP_FVBNJ_G0012395	pseudogene	Chr4:10949898-10950128 (+)
LP/J	MGP_LPJ_G0012467	pseudogene	Chr4:11670007-11670237 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012402	pseudogene	Chr4:12693187-12693417 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012813	pseudogene	Chr4:11482745-11482975 (+)
PWK/PhJ	MGP_PWKPhJ_G0011955	pseudogene	Chr4:11121928-11122158 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011777	pseudogene	Chr4:11370399-11370629 (+)
WSB/EiJ	MGP_WSBEiJ_G0012149	pseudogene	Chr4:11512544-11512774 (+)

Homology

• Gene Tree
  Gm11838
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083280 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083280	Ensembl Gene Model | MGI Sequence Detail	231	C57BL/6J
transcript	ENSMUST00000121999	Ensembl | MGI Sequence Detail	231	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;