Gm11729 Gene Detail

Summary

• Symbol
  Gm11729
• Name
  predicted gene 11729

• Feature Type
  lncRNA gene
• IDs
  MGI:3650942
  NCBI Gene: 105827746
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:117305215-117306194 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 82.96 cM

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650942	lncRNA gene	Chr11:117305215-117306194 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005324	lincRNA gene	Chr11:121652671-121653650 (+)
A/J	MGP_AJ_G0005307	lincRNA gene	Chr11:116265105-116266084 (+)
AKR/J	MGP_AKRJ_G0005286	lincRNA gene	Chr11:119812508-119813487 (+)
BALB/cJ	MGP_BALBcJ_G0005289	lincRNA gene	Chr11:116646159-116647138 (+)
C3H/HeJ	MGP_C3HHeJ_G0005238	lincRNA gene	Chr11:120091257-120092236 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005441	lincRNA gene	Chr11:125371921-125372900 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004831	lincRNA gene	Chr11:113286986-113287974 (+)
CAST/EiJ	MGP_CASTEiJ_G0005185	lincRNA gene	Chr11:121513720-121514702 (+)
CBA/J	MGP_CBAJ_G0005227	lincRNA gene	Chr11:130294488-130295467 (+)
DBA/2J	MGP_DBA2J_G0005245	lincRNA gene	Chr11:115670085-115671064 (+)
FVB/NJ	MGP_FVBNJ_G0005270	lincRNA gene	Chr11:115286707-115287686 (+)
LP/J	MGP_LPJ_G0005326	lincRNA gene	Chr11:121993377-121994356 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005252	lincRNA gene	Chr11:129302079-129303058 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005445	lincRNA gene	Chr11:120458756-120459735 (+)
PWK/PhJ	MGP_PWKPhJ_G0005134	lincRNA gene	Chr11:117029027-117030003 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005055	lincRNA gene	Chr11:120184954-120185912 (+)
WSB/EiJ	MGP_WSBEiJ_G0005233	lincRNA gene	Chr11:120417378-120418357 (+)

Homology

• Gene Tree
  Gm11729
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086588 (Evidence)
• NCBI Gene
  105827746

Representative Sequences			Length	Strain/Species
genomic	105827746	NCBI Gene Model | MGI Sequence Detail	980	C57BL/6J
transcript	NR_132097	RefSeq | MGI Sequence Detail	728	ZRU/MplStud

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;