Gm12489 Pseudogene Detail

Summary

• Symbol
  Gm12489
• Name
  predicted gene 12489

• Feature Type
  pseudogene
• IDs
  MGI:3650952
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:107826978-107827125 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650952	pseudogene	Chr3:107826978-107827125 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012341	pseudogene	Chr3:109440866-109441013 (+)
A/J	MGP_AJ_G0012336	pseudogene	Chr3:105974944-105975091 (+)
AKR/J	MGP_AKRJ_G0012302	pseudogene	Chr3:108551682-108551829 (+)
BALB/cJ	MGP_BALBcJ_G0012319	pseudogene	Chr3:105665644-105665791 (+)
C3H/HeJ	MGP_C3HHeJ_G0012183	pseudogene	Chr3:108893340-108893487 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012631	pseudogene	Chr3:113525702-113525849 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011006	pseudogene	Chr3:102119774-102119921 (+)
CAST/EiJ	MGP_CASTEiJ_G0011951	pseudogene	Chr3:108275021-108275168 (+)
CBA/J	MGP_CBAJ_G0012162	pseudogene	Chr3:117385256-117385403 (+)
DBA/2J	MGP_DBA2J_G0012218	pseudogene	Chr3:105160688-105160835 (+)
FVB/NJ	MGP_FVBNJ_G0012221	pseudogene	Chr3:103040314-103040461 (+)
LP/J	MGP_LPJ_G0012288	pseudogene	Chr3:110859745-110859892 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012224	pseudogene	Chr3:123456476-123456623 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012636	pseudogene	Chr3:108147749-108147896 (+)
PWK/PhJ	MGP_PWKPhJ_G0011794	pseudogene	Chr3:104905461-104905608 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011609	pseudogene	Chr3:106281513-106281660 (+)
WSB/EiJ	MGP_WSBEiJ_G0011982	pseudogene	Chr3:108670252-108670399 (+)

Homology

• Gene Tree
  Gm12489
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12489
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082720 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082720	Ensembl Gene Model | MGI Sequence Detail	148	C57BL/6J
transcript	ENSMUST00000119364	Ensembl | MGI Sequence Detail	148	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;