Gm12813 Pseudogene Detail

Summary

• Symbol
  Gm12813
• Name
  predicted gene 12813

• Feature Type
  pseudogene
• IDs
  MGI:3650999
  NCBI Gene: 100040607
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:113225384-113251556 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 51.53 cM

Strain
Comparison

• SNPs within 2kb
  878 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650999	pseudogene	Chr4:113225384-113251699 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0040346	pseudogene	Chr4:111161532-111202717 (+)
C3H/HeJ	MGP_C3HHeJ_G0039970	pseudogene	Chr4:113592979-113618684 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0039936	pseudogene	Chr4:122484896-122540606 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0040097	pseudogene	Chr4:108770361-108797375 (+)
LP/J	MGP_LPJ_G0040187	pseudogene	Chr4:114109486-115186393 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041039	pseudogene	Chr4:113177076-113208113 (+)
PWK/PhJ	MGP_PWKPhJ_G0038736	pseudogene	Chr4:107945033-107997438 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12813
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm12813
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000083384 (Evidence)
• NCBI Gene
  100040607

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083384	Ensembl Gene Model | MGI Sequence Detail	26173	C57BL/6J
transcript	ENSMUST00000119615	Ensembl | MGI Sequence Detail	902	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:262448 Narita T, et al., Mice lacking all of the Skint family genes. Int Immunol. 2018 Apr 26;
• Latest
  J:323863 McKenzie DR, et al., Normality sensing licenses local T cells for innate-like tissue surveillance. Nat Immunol. 2022 Mar;23(3):411-422