Gm13549 Pseudogene Detail

Summary

• Symbol
  Gm13549
• Name
  predicted gene 13549

• Feature Type
  pseudogene
• IDs
  MGI:3651027
  NCBI Gene: 625354
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:59229330-59230125 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 33.73 cM

Strain
Comparison

• SNPs within 2kb
  155 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651027	pseudogene	Chr2:59228835-59230233 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011659	pseudogene	Chr2:58928542-58929337 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0011622	pseudogene	Chr2:58213427-58214222 (-)
BALB/cJ	MGP_BALBcJ_G0011638	pseudogene	Chr2:56763491-56764286 (-)
C3H/HeJ	MGP_C3HHeJ_G0011524	pseudogene	Chr2:58315894-58316689 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011930	pseudogene	Chr2:60692483-60693278 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011317	pseudogene	Chr2:58345443-58346260 (-)
CBA/J	MGP_CBAJ_G0011495	pseudogene	Chr2:62971002-62971797 (-)
DBA/2J	MGP_DBA2J_G0011551	pseudogene	Chr2:56272091-56272886 (-)
FVB/NJ	MGP_FVBNJ_G0011553	pseudogene	Chr2:55804436-55805231 (-)
LP/J	MGP_LPJ_G0011617	pseudogene	Chr2:58782253-58783048 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011552	pseudogene	Chr2:64624117-64626043 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011922	pseudogene	Chr2:58244749-58245544 (-)
PWK/PhJ	MGP_PWKPhJ_G0011175	pseudogene	Chr2:56104412-56105225 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012051	pseudogene	Chr4:115797685-115798405 (-)
WSB/EiJ	MGP_WSBEiJ_G0011341	pseudogene	Chr2:58528413-58529208 (-)

Homology

• Gene Tree
  Gm13549
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13549
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000080982 (Evidence)
• NCBI Gene
  625354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080982	Ensembl Gene Model | MGI Sequence Detail	796	C57BL/6J
transcript	ENSMUST00000118339	Ensembl | MGI Sequence Detail	796	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;