Gm13938 Gene Detail

Summary

• Symbol
  Gm13938
• Name
  predicted gene 13938

• Feature Type
  lncRNA gene
• IDs
  MGI:3651046
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:76553120-76617052 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 45.14 cM

Strain
Comparison

• SNPs within 2kb
  975 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651046	lncRNA gene	Chr2:76553120-76617052 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003596	antisense lncRNA gene	Chr2:77118581-77182646 (+)
A/J	MGP_AJ_G0003578	antisense lncRNA gene	Chr2:74129843-74193769 (+)
AKR/J	MGP_AKRJ_G0003556	antisense lncRNA gene	Chr2:76122736-76186635 (+)
BALB/cJ	MGP_BALBcJ_G0003567	antisense lncRNA gene	Chr2:74304625-74368713 (+)
C3H/HeJ	MGP_C3HHeJ_G0003514	antisense lncRNA gene	Chr2:76326792-76391092 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003705	antisense lncRNA gene	Chr2:79404937-79470856 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003214	antisense lncRNA gene	Chr2:71533809-71597966 (+)
CAST/EiJ	MGP_CASTEiJ_G0003477	antisense lncRNA gene	Chr2:76664645-76730901 (+)
CBA/J	MGP_CBAJ_G0003511	antisense lncRNA gene	Chr2:82340500-82409625 (+)
DBA/2J	MGP_DBA2J_G0003519	antisense lncRNA gene	Chr2:73718380-73782703 (+)
FVB/NJ	MGP_FVBNJ_G0003539	antisense lncRNA gene	Chr2:73114997-73178678 (+)
LP/J	MGP_LPJ_G0003592	antisense lncRNA gene	Chr2:77001532-77068151 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003527	antisense lncRNA gene	Chr2:84161793-84228375 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003707	antisense lncRNA gene	Chr2:76248551-76312995 (+)
PWK/PhJ	MGP_PWKPhJ_G0003432	antisense lncRNA gene	Chr2:73681686-73746089 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003376	antisense lncRNA gene	Chr2:76496494-76560192 (+)
WSB/EiJ	MGP_WSBEiJ_G0003511	antisense lncRNA gene	Chr2:76715250-76779275 (+)

Homology

• Gene Tree
  Gm13938
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  2
• Targeted
  2
• Genomic Mutations
  3 involving Gm13938
• Incidental Mutations
  APF
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000086354 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086354	Ensembl Gene Model | MGI Sequence Detail	63933	C57BL/6J
transcript	ENSMUST00000156809	Ensembl | MGI Sequence Detail	493	Not Applicable

References

• Summaries
  All 10

  Phenotypes 6
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087