Spata31f1a Gene Detail

Summary

• Symbol
  Spata31f1a
• Name
  spermatogenesis associated 31 subfamily F member 1A
• Synonyms
  Fam205a1, Gm12429

• Feature Type
  protein coding gene
• IDs
  MGI:3651059
  NCBI Gene: 433698
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:42848071-42853888 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 22.86 cM

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651059	protein coding gene	Chr4:42848067-42856138 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0028599	protein coding gene	Chr4:42150933-42155935 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  SPATA31F1, SPATA31 subfamily F member 1

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SPATA31F1, SPATA31 subfamily F member 1
  
• Synonyms
  C9orf144B, FAM205A
• Links
  HGNC:41911

  NCBI Gene ID: 259308

  neXtProt AC: NX_Q6ZU69

  UniProt: Q6ZU69

  
  
• Chr Location
  9p13.3; chr9:34723053-34729488 (-)  GRCh38

---

• Human Ortholog
  SPATA31F2P, SPATA31 subfamily F member 2, pseudogene
  
• Synonyms
  C9orf144, C9orf144A, FAM205B, FAM205BP
• Links
  HGNC:24504

  NCBI Gene ID: 389715

  
  
• Chr Location
  9p13.3; chr9:34830267-34838586 (-)  GRCh38

---

• MGI Vertebrate Homology
  Spata31f1a stringent orthology
  2 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: SPATA31F1, SPATA31F2P
• Gene Tree
  Spata31f1a
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically and radiation induced
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Spata31f1a
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  24 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS71367.1

• Ensembl
  ENSMUSG00000078721 (Evidence)
• NCBI Gene
  433698

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078721	Ensembl Gene Model | MGI Sequence Detail	5818	C57BL/6J
transcript	ENSMUST00000107979	Ensembl | MGI Sequence Detail	4146	Not Applicable
polypeptide	ENSMUSP00000103613	Ensembl | MGI Sequence Detail	1314	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039509 SPATA31
  IPR027970 SPATA31F3-like

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:7461228

References

• Summaries
  All 13

  Phenotypes 2
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
• Latest
  J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;