Gm12430 Pseudogene Detail

Summary

• Symbol
  Gm12430
• Name
  predicted gene 12430

• Feature Type
  pseudogene
• IDs
  MGI:3651061
  NCBI Gene: 666473
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:47453632-47454953 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 26.03 cM

Strain
Comparison

• SNPs within 2kb
  196 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651061	pseudogene	Chr4:47453555-47455396 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012640	pseudogene	Chr4:45835253-45836571 (+)
A/J	MGP_AJ_G0012629	pseudogene	Chr4:44111537-44112858 (+)
AKR/J	MGP_AKRJ_G0012598	pseudogene	Chr4:45225220-45226541 (+)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012475	pseudogene	Chr4:45823552-45824873 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012934	pseudogene	Chr4:47517804-47519125 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012577	pseudogene	Chr5:25190161-25191466 (-)
CBA/J	MGP_CBAJ_G0012455	pseudogene	Chr4:49030747-49034371 (+)
DBA/2J	MGP_DBA2J_G0012511	pseudogene	Chr4:44015222-44016543 (+)
FVB/NJ	MGP_FVBNJ_G0012512	pseudogene	Chr4:43284848-43286169 (+)
LP/J	MGP_LPJ_G0012581	pseudogene	Chr4:45890199-45892970 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012518	pseudogene	Chr4:52059996-52061317 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012935	pseudogene	Chr4:45451410-45452731 (+)
PWK/PhJ	MGP_PWKPhJ_G0012398	pseudogene	Chr5:24365330-24366636 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012198	pseudogene	Chr5:24966202-24967513 (-)
WSB/EiJ	MGP_WSBEiJ_G0012614	pseudogene	Chr5:25676667-25677981 (-)

Homology

• Gene Tree
  Gm12430
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081152 (Evidence)
• NCBI Gene
  666473

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081152	Ensembl Gene Model | MGI Sequence Detail	1322	C57BL/6J
transcript	ENSMUST00000121539	Ensembl | MGI Sequence Detail	1322	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;