Gm12676 Gene Detail

Summary

• Symbol
  Gm12676
• Name
  predicted gene 12676

• Feature Type
  lncRNA gene
• IDs
  MGI:3651064
  NCBI Gene: 100502875
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:97642405-97645626 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.52 cM

Strain
Comparison

• SNPs within 2kb
  179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651064	lncRNA gene	Chr4:97642405-97645626 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015562	unclassified non-coding RNA gene	Chr4:97880843-97884039 (-)
A/J	MGP_AJ_G0015539	unclassified non-coding RNA gene	Chr4:94466249-94469446 (-)
AKR/J	MGP_AKRJ_G0015503	unclassified non-coding RNA gene	Chr4:96779219-96782419 (-)
BALB/cJ	MGP_BALBcJ_G0015501	unclassified non-coding RNA gene	Chr4:94732183-94735377 (-)
C3H/HeJ	MGP_C3HHeJ_G0015323	unclassified non-coding RNA gene	Chr4:97571801-97574977 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015954	unclassified non-coding RNA gene	Chr4:101649376-101652555 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013690	unclassified non-coding RNA gene	Chr4:89889759-89892976 (-)
CAST/EiJ	MGP_CASTEiJ_G0014878	unclassified non-coding RNA gene	Chr4:95346573-95349766 (-)
CBA/J	MGP_CBAJ_G0015304	unclassified non-coding RNA gene	Chr4:104698388-104703813 (-)
DBA/2J	MGP_DBA2J_G0015398	unclassified non-coding RNA gene	Chr4:94249450-94252674 (-)
FVB/NJ	MGP_FVBNJ_G0015405	unclassified non-coding RNA gene	Chr4:93096407-93100064 (-)
LP/J	MGP_LPJ_G0015478	unclassified non-coding RNA gene	Chr4:98199230-98202420 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015428	unclassified non-coding RNA gene	Chr4:110501171-110504345 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015996	unclassified non-coding RNA gene	Chr4:97029121-97032389 (-)
PWK/PhJ	MGP_PWKPhJ_G0014663	unclassified non-coding RNA gene	Chr4:92380799-92384230 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014452	unclassified non-coding RNA gene	Chr4:94470208-94473364 (-)
WSB/EiJ	MGP_WSBEiJ_G0014983	unclassified non-coding RNA gene	Chr4:97130376-97134123 (-)

Homology

• Gene Tree
  Gm12676
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12676
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085710 (Evidence)
• NCBI Gene
  100502875

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085710	Ensembl Gene Model | MGI Sequence Detail	3222	C57BL/6J
transcript	ENSMUST00000149078	Ensembl | MGI Sequence Detail	808	Not Applicable

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12