Gm12677 Pseudogene Detail

Summary

• Symbol
  Gm12677
• Name
  predicted gene 12677

• Feature Type
  pseudogene
• IDs
  MGI:3651065
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:44313427-44314058 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 23.51 cM

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651065	pseudogene	Chr4:44313427-44314058 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012628	pseudogene	Chr4:42484460-42485091 (-)
A/J	MGP_AJ_G0012619	pseudogene	Chr4:40977973-40978604 (-)
AKR/J	MGP_AKRJ_G0012587	pseudogene	Chr4:41930289-41930835 (-)
BALB/cJ	MGP_BALBcJ_G0012603	pseudogene	Chr4:41064095-41064726 (-)
C3H/HeJ	MGP_C3HHeJ_G0012465	pseudogene	Chr4:42550682-42551313 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012922	pseudogene	Chr4:44107937-44108568 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011240	pseudogene	Chr4:38391080-38391680 (-)
CAST/EiJ	MGP_CASTEiJ_G0012220	pseudogene	Chr4:42065415-42067566 (-)
CBA/J	MGP_CBAJ_G0012443	pseudogene	Chr4:45475354-45475985 (-)
DBA/2J	MGP_DBA2J_G0012501	pseudogene	Chr4:40870157-40870788 (-)
FVB/NJ	MGP_FVBNJ_G0012502	pseudogene	Chr4:40103219-40103850 (-)
LP/J	MGP_LPJ_G0012570	pseudogene	Chr4:42556407-42557038 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012506	pseudogene	Chr4:48658852-48660316 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012922	pseudogene	Chr4:42145179-42145818 (-)
PWK/PhJ	MGP_PWKPhJ_G0012049	pseudogene	Chr4:40919386-40919967 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011865	pseudogene	Chr4:41668000-41668624 (-)
WSB/EiJ	MGP_WSBEiJ_G0012243	pseudogene	Chr4:42022944-42023575 (-)

Homology

• Gene Tree
  Gm12677
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081127 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081127	Ensembl Gene Model | MGI Sequence Detail	632	C57BL/6J
transcript	ENSMUST00000118668	Ensembl | MGI Sequence Detail	426	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;