Gm11888 Pseudogene Detail

Summary

• Symbol
  Gm11888
• Name
  predicted gene 11888

• Feature Type
  pseudogene
• IDs
  MGI:3651111
  NCBI Gene: 625462
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:23485264-23486019 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 10.27 cM

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651111	pseudogene	Chr4:23484820-23486020 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012556	pseudogene	Chr4:20588284-20589484 (+)
A/J	MGP_AJ_G0012547	pseudogene	Chr4:19982109-19983309 (+)
AKR/J	MGP_AKRJ_G0012514	pseudogene	Chr4:20410229-20411429 (+)
BALB/cJ	MGP_BALBcJ_G0012533	pseudogene	Chr4:20000173-20001373 (+)
C3H/HeJ	MGP_C3HHeJ_G0012395	pseudogene	Chr4:20598220-20599420 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012848	pseudogene	Chr4:21366918-21368118 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012153	pseudogene	Chr4:20336213-20337407 (+)
CBA/J	MGP_CBAJ_G0012373	pseudogene	Chr4:22017440-22018640 (+)
DBA/2J	MGP_DBA2J_G0012427	pseudogene	Chr4:19856314-19857514 (+)
FVB/NJ	MGP_FVBNJ_G0012430	pseudogene	Chr4:19524089-19525289 (+)
LP/J	MGP_LPJ_G0012501	pseudogene	Chr4:20620541-20621741 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012436	pseudogene	Chr4:23357276-23358476 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012850	pseudogene	Chr4:20360844-20362044 (+)
PWK/PhJ	MGP_PWKPhJ_G0011984	pseudogene	Chr4:19642285-19643479 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011804	pseudogene	Chr4:20160064-20161255 (+)
WSB/EiJ	MGP_WSBEiJ_G0012178	pseudogene	Chr4:20331392-20332592 (+)

Homology

• Gene Tree
  Gm11888
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000083785 (Evidence)
• NCBI Gene
  625462

Representative Sequences			Length	Strain/Species
genomic	625462	NCBI Gene Model | MGI Sequence Detail	756	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;