Gm13709 MGI Mouse Gene Detail - MGI:3651118

Sequence Map

Chr2:73201253-73209641 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3651118	lncRNA gene	Chr2:73187040-73209642 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003587	antisense lncRNA gene	Chr2:73645854-73654234 (+)
A/J	MGP_AJ_G0003569	antisense lncRNA gene	Chr2:70750675-70759061 (+)
AKR/J	MGP_AKRJ_G0003547	antisense lncRNA gene	Chr2:72695811-72704199 (+)
BALB/cJ	MGP_BALBcJ_G0003558	antisense lncRNA gene	Chr2:70942479-70950859 (+)
C3H/HeJ	MGP_C3HHeJ_G0003505	antisense lncRNA gene	Chr2:72881240-72889628 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003696	antisense lncRNA gene	Chr2:75838205-75846591 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003205	antisense lncRNA gene	Chr2:67953364-67960858 (+)
CAST/EiJ	MGP_CASTEiJ_G0003468	antisense lncRNA gene	Chr2:73147291-73155718 (+)
CBA/J	MGP_CBAJ_G0003502	antisense lncRNA gene	Chr2:78601928-78610142 (+)
DBA/2J	MGP_DBA2J_G0003510	antisense lncRNA gene	Chr2:70350950-70359339 (+)
FVB/NJ	MGP_FVBNJ_G0003530	antisense lncRNA gene	Chr2:69762565-69771207 (+)
LP/J	MGP_LPJ_G0003583	antisense lncRNA gene	Chr2:73519422-73527802 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003518	antisense lncRNA gene	Chr2:80537209-80546803 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003698	antisense lncRNA gene	Chr2:72779431-72787805 (+)
PWK/PhJ	MGP_PWKPhJ_G0003423	antisense lncRNA gene	Chr2:70270789-70279353 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003367	antisense lncRNA gene	Chr2:73014231-73022670 (+)
WSB/EiJ	MGP_WSBEiJ_G0003503	antisense lncRNA gene	Chr2:73229964-73238366 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000086546	Ensembl Gene Model \| MGI Sequence Detail	8389	C57BL/6J	± kb
	transcript	ENSMUST00000138573	Ensembl \| MGI Sequence Detail	614	Not Applicable

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Summaries

All 20

Phenotypes 13
Earliest

J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
Latest

J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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